Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92344g00002 ATGGCTGAAATTGCTTCTGGTGCGGCAGCAACACTCTTGGCCAATCTAGCAACAAAATCATTCCGAGAGATTGCTCTGGCATTTGGTCTTAAAGATGATTTGAAAAAGCTTGAGAGTTGTTTGAGAATCATCAATGCATATCTCATAGATGCCGAGAACAAGCAAGAAAAGAACCACAATATAGCTGAGTGGTTGAAGCAACTTAGAGAGGCATTTGATGATGCTGGTGACATATTGGATGAAATAGAATATGAGGCAAAACGTAATGAAGTGGTCAAAATTTATGGAAGCATTAGAACGAAGGTACAACGATTCTTCTCATACACAAGTAATCCACTTGCTTTTCGCATAAGAATGGTTCATAAAATCATAGATATGAAACATAGGATAGATGAAAAAGTAAGAGAAGGGAGAATCTTGGGTATAGTGAAACAACATGTTAATACTCCAACACTGGAGCGCAATTTACAATGGCGAGAAACTAGTTCTTCGTTGCCCTTACGAGTGTGTGGTAGACATGAAGAGAAAGAGGAGATCATAGAGTTATTAATGGGACAACATTCAAAGGCCAGTAATGTTGATGTGATATCGATTGTTGGAATCGGAGGTTTGGGGAAGACTACACTTGCTCAAATGGTTTATGATGATGATAGGGTGAAGGGGAATTTTAATATGTCAATGTGGGTGTGTGTATCTGATGATTTTGATGCGAAGAGCTTAATACAAAGAATTATTCATGCTCTCTCAAAACCAGAGAATCTAGTTAACGTTGATGCAAATTCTAGTTTGGAACATATGGTGTCTCTTCTCAATGAAAATTTATGTGGTAAGAAGTTCTTACTTGTGCTAGACGATGTTTGGAATGAAAACCATAGCAAATGGGATGAATTGAGAAATCACTTATTGAAGGCAGGGAATGACAAAGAATCAAAAGGGAGCAAAATCATAGTGACCACACGTAGCCAAAAAGTTGCTGATATAGTTGGAAGTGGTCTTCTAATAAATTTAAAAGCACTTCCCGAGGAGGAATGTTGGAAGCTATTTGTCAAATGTGCATTCCAAGAAGAGAGGGACCAAGAGAAGTATCCAAGGCTAAAGCGAATTGGGGTGGAAATTGTTAAAAAATGCAAAGGGGTGCCCTTAGCTATAACAACTTTGGGTTGCTTGCTTAGATCAAAATCCCATGATGAAAATGAGTGGAGAAAAATAAGCGACAGTGAGGTGTGGAAACTCGATCAAGAAGAAACTGGCATTTTTCCATCATTGAGATTGAGTTATGATCACTTGTCACAAGAAGTAAAACAATGTTTTTCATACTGTTCTTGTTTCCCGAAGGATTACAAATGTCAGGTTATTGAGTTGATTATGTTTTGGATGGCTCATGGACTCCTCCAACCTATACATGAAGATGGAGATGCAGAAGATATTGGAGAGTTGTATATTAGAAAGCTTGTTTCAGCATCTTTACTTCAAATTGAAGGAGATTTTAAATATCCTATTTCATTTAAGACACTCAAAATGCATGATCTTATACATGATCTTGCAAAATCAACACTGAAGAAGTCTAGTAAGACAAGAACTATTGTGCAAGAAGGGAAAAAAGATACATCTACAGAATGGGCCTCCAACAAATTCAACTATTTGAAGGTGTTGCAGTTAAGATGTATGGAATCGAGCTCGTTACCCAATGATTGCTTTGACACAATAAAGAAGCACTTGAGATATCTCAATCTAAGATATTGTCCTATTTTGGAAAAGCTCCCTGATTCCATTTGCAAGCTACAAAATTTGCAGAGTCTGAACCTTGGCAATTATAATAAGATTCATACGCTTCCCAAAAACATGAAAAACCTCATTAGCCTTCAATATTTGTTTTTGAGAGTCAAAGCTACAAGTTTGTCCTCAATGAACATAGAGTGCTTCCAACAACTCAAATTCTTATATCTTTACAATTGTTCAGAGTTAGTGTCCATACCAAGTGCTGTTGGTCGCTTGACTACTTTAAACAAGTTGTTGATTTATTGGTGTCATAATTTGGTTAGTTTTGAAGATGAAGAGGAAGAAGGAAAGGAACATGTGGCACTCCATAATTTAAACCTTCAATTATTCGATATCATTGGAGCAGAAAAGTTGGAAGCTTTACCTAATTGGTTTGAAAGAGCTACTAAATTGCGATATTTGAGAATACGGAGAACAAGTTTAAAATCATTGCCTACAAGATTGCCAATGGCCTCTCTTGAAGAACTTCATATCAATGATTGTCCAGAATTGTCATCTCTTTCTAACAACATGGATCAAAGTCAAAGTCTGCAGTATTTGAATATATCTGATTGTCCTACACTAACCCAAAGGTACAATAAGAGAACAGGTCCGGATTGGAAAAAAATTGCTCATATCCCATTTTGTGAGTGTCTAGTCCCAAATTCAGACTTTGTGGACGACATGTATGCAGAAGGGGATGTTGCCACGTCCAACCCTCCGAAAGGGGCATTTGATATGGCGTAA 2505 0.3721 MAEIASGAAATLLANLATKSFREIALAFGLKDDLKKLESCLRIINAYLIDAENKQEKNHNIAEWLKQLREAFDDAGDILDEIEYEAKRNEVVKIYGSIRTKVQRFFSYTSNPLAFRIRMVHKIIDMKHRIDEKVREGRILGIVKQHVNTPTLERNLQWRETSSSLPLRVCGRHEEKEEIIELLMGQHSKASNVDVISIVGIGGLGKTTLAQMVYDDDRVKGNFNMSMWVCVSDDFDAKSLIQRIIHALSKPENLVNVDANSSLEHMVSLLNENLCGKKFLLVLDDVWNENHSKWDELRNHLLKAGNDKESKGSKIIVTTRSQKVADIVGSGLLINLKALPEEECWKLFVKCAFQEERDQEKYPRLKRIGVEIVKKCKGVPLAITTLGCLLRSKSHDENEWRKISDSEVWKLDQEETGIFPSLRLSYDHLSQEVKQCFSYCSCFPKDYKCQVIELIMFWMAHGLLQPIHEDGDAEDIGELYIRKLVSASLLQIEGDFKYPISFKTLKMHDLIHDLAKSTLKKSSKTRTIVQEGKKDTSTEWASNKFNYLKVLQLRCMESSSLPNDCFDTIKKHLRYLNLRYCPILEKLPDSICKLQNLQSLNLGNYNKIHTLPKNMKNLISLQYLFLRVKATSLSSMNIECFQQLKFLYLYNCSELVSIPSAVGRLTTLNKLLIYWCHNLVSFEDEEEEGKEHVALHNLNLQLFDIIGAEKLEALPNWFERATKLRYLRIRRTSLKSLPTRLPMASLEELHINDCPELSSLSNNMDQSQSLQYLNISDCPTLTQRYNKRTGPDWKKIAHIPFCECLVPNSDFVDDMYAEGDVATSNPPKGAFDMA 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92344g00002 834 FunFam Probable disease resistance protein At1g63360 426 517 - -
Stsc92344g00002 834 Pfam Rx N-terminal domain 11 96 IPR041118 -
Stsc92344g00002 834 Pfam NB-ARC domain 175 406 IPR002182 GO:0043531
Stsc92344g00002 834 Gene3D - 426 514 IPR036388 -
Stsc92344g00002 834 PANTHER DISEASE RESISTANCE PROTEIN RP 60 775 IPR044974 GO:0006952
Stsc92344g00002 834 SUPERFAMILY L domain-like 498 781 - -
Stsc92344g00002 834 Gene3D - 8 124 - -
Stsc92344g00002 834 Gene3D - 153 330 IPR027417 -
Stsc92344g00002 834 PRINTS Disease resistance protein signature 273 287 - -
Stsc92344g00002 834 PRINTS Disease resistance protein signature 765 781 - -
Stsc92344g00002 834 PRINTS Disease resistance protein signature 376 390 - -
Stsc92344g00002 834 PRINTS Disease resistance protein signature 195 210 - -
Stsc92344g00002 834 Gene3D - 338 425 IPR042197 -
Stsc92344g00002 834 Gene3D Ribonuclease Inhibitor 515 796 IPR032675 -
Stsc92344g00002 834 FunFam Probable disease resistance protein At1g61300 154 330 - -
Stsc92344g00002 834 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 440 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92344g00002 Stsc-Chr92344 6099 8737 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92344g00002 192 781 WRKY Transcription Factor Family AT5G45050 23.867 2.49e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92344g00002 - - adu:107472938 1102.43