Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92344g00001 ATGAAAATTGTTGAAAAATGCAAAGGGGTGCCCTTAGCTATAACAACTTTGGGTTGCTTGCTTAAATCAAAATCCCATGATGAAAATGAGTGGAGAAAAATAAGAGATAGTGAGGTGTGGCAACTCGATGAAAAAGAAACTAGCATTTTACCATCATTGAGATTGAGTTATAATCACTTGCCACCAGAAGTAAAGCAATGTTTTTCGTACTGCTCTTTTTTTCCAAAGGATTATGAATATGAAGTTATTGACTTGATTATGTTCTGGATGGCTCATGGACTTCTCCATTCCACACGTGAAGAGGAAGATGCAGAAGATATTGGAAAGTTGTATATTAAGAAGCTTGTTTCAATGTCTTTGCTTCAATATGAAGTAGCTTCCAATCATTCTATGTCATCTTTTAGTGAACTCAAAATGCATGATCTTGTACATGATCTTGCACAACAAACAATGAAGGAGTCCAGCAAGGCTAGAAGCATTGTGAAAGTGGGGCAACAAGAATCATCTACAGAGTGGGCCTCCAACAAATTCAACTATCTGAGGGCGATTCACTTAGAAAAAATGAAATCGAGCTTGTTGCGTGATGATTGCTTTGACACAATGAAGAAGCACTTGAGATATCTCAATCTAAAACATTCTCCTATTTTGACAAAATTCCCTGATTCCATTTGCAAGCTACAAAATTTGCAGAGTTTGGGAGTTAAAAGTCATATGCTTCCCAAAAACATGAAATATCTCATCAGCCTTCAATATTTGTTTTTGACTGTCGAAGACACAAGTTTGTCCTCAATGAACATAGGGCGCTTTCTACAACTCAAATTCTTATTTCTTAAAGATTGTTCAGAGTTAGTGTCTATACCAAGTGCTGTCGGTCGCTTGACTACTTTAAAGAAGTTGATGATTTATGGGTGTGGTAATTTGGTGAGTTTTGAGGATGAAGAGAAAGAAGGAAAAGAACATGTGGCGCTCCAATATTTAAACCTTCAATTATTGGATATCAGGGAGGCTCGGAGGTTGGAAGCTTTACCAAATTGGCTTGAAAGAGCTACTAAATTGCAGTCTTTGGAAATAACTGATTGTCCACAATTGTCATCTCTTCCTGACAACATGGATACTCAAAGTCTGCAGTCTTTGGATATATCTCATTGTCCACAATTGTCATCTCTTCCTGACAACATGGATACTCAAAGTCTGCAGTCTTTGGATATATCTCATTGTCCACAATTGTCATCTCTTCCTGACAACATGGATACTAAAAGTCTGCAGTCTTTGCGTATATTTGATTGTCCACAATTGTCATCTCTTNNNNNNNNNNGAGATATCTGA 1326 0.3688 MKIVEKCKGVPLAITTLGCLLKSKSHDENEWRKIRDSEVWQLDEKETSILPSLRLSYNHLPPEVKQCFSYCSFFPKDYEYEVIDLIMFWMAHGLLHSTREEEDAEDIGKLYIKKLVSMSLLQYEVASNHSMSSFSELKMHDLVHDLAQQTMKESSKARSIVKVGQQESSTEWASNKFNYLRAIHLEKMKSSLLRDDCFDTMKKHLRYLNLKHSPILTKFPDSICKLQNLQSLGVKSHMLPKNMKYLISLQYLFLTVEDTSLSSMNIGRFLQLKFLFLKDCSELVSIPSAVGRLTTLKKLMIYGCGNLVSFEDEEKEGKEHVALQYLNLQLLDIREARRLEALPNWLERATKLQSLEITDCPQLSSLPDNMDTQSLQSLDISHCPQLSSLPDNMDTQSLQSLDISHCPQLSSLPDNMDTKSLQSLRIFDCPQLSSLXXXXDI 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92344g00001 441 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Stsc92344g00001 441 SUPERFAMILY L domain-like 138 436 - -
Stsc92344g00001 441 PRINTS Disease resistance protein signature 7 21 - -
Stsc92344g00001 441 PRINTS Disease resistance protein signature 370 386 - -
Stsc92344g00001 441 PANTHER DISEASE RESISTANCE PROTEIN RP 2 435 IPR044974 GO:0006952
Stsc92344g00001 441 Pfam NB-ARC domain 2 57 IPR002182 GO:0043531
Stsc92344g00001 441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 71 IPR027417 -
Stsc92344g00001 441 Gene3D - 1 56 IPR042197 -
Stsc92344g00001 441 FunFam Probable disease resistance protein At1g63360 57 149 - -
Stsc92344g00001 441 Gene3D - 57 150 IPR036388 -
Stsc92344g00001 441 Pfam Leucine Rich Repeat 204 226 IPR001611 GO:0005515
Stsc92344g00001 441 Gene3D Ribonuclease Inhibitor 152 369 IPR032675 -
Stsc92344g00001 441 Gene3D Ribonuclease Inhibitor 370 439 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92344g00001 Stsc-Chr92344 32 3468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92344g00001 267 435 WRKY Transcription Factor Family AT5G45050 25.397 5.22e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92344g00001 - - adu:107472938 503.442