Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92316g00001 ATGGAGCTACAAACAACCACCACGGCGGCCACCGCTACTTCATCCGTCACCGCCGCCACAAAATCCACCGTCTCCCGCGTAGGAGGAACGCGCCACCCTGTCTACCGCGGCGTCAGGAAGCGTCGATGGGGGAAATGGGTTTCAGAGATTCGAGAGCCTCGCAAGAAGTCACGCATATGGCTCGGTTCCTTCCCTTCGCCGGAGATGGCGGCGAAAGCTTACGACGTCGCCGCCTACTTCCTCAAAGGCCGGAAAGCGCAGCTCAATTTTCCCGACGAGGTTCACCGTCTTCCGCCGCTTCCTCCGCCGTCGTCATGCACCGCACGTGACATCCAAGCCGCAGCTGCAAAAGCAGCACACATGGCCGCCGCCGAAGCCGTCAATTCCTCCGAAGACGCCGGTGATTCGCCGGAGAAGTGCGGCATTTCGAATTCTTCCTCCGACGGCGACGATTTCTGGGGCGAAATTGAGCTGCCGGAGCTCATGAACGATGGAGAGTGCAGATGGAGTTATTCTCACGGCGGAGGTGGGTGGAACTCCGCCGGAAACGGCGGCTCCGGCGACGTAACGGCTTGGCCGGAAGTTGAGTTACCTTATAGTGGTTAG 606 0.6007 MELQTTTTAATATSSVTAATKSTVSRVGGTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPSPEMAAKAYDVAAYFLKGRKAQLNFPDEVHRLPPLPPPSSCTARDIQAAAAKAAHMAAAEAVNSSEDAGDSPEKCGISNSSSDGDDFWGEIELPELMNDGECRWSYSHGGGGWNSAGNGGSGDVTAWPEVELPYSG 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92316g00001 201 FunFam Ethylene-responsive transcription factor 2 33 92 - -
Stsc92316g00001 201 Pfam AP2 domain 33 83 IPR001471 GO:0003700|GO:0006355
Stsc92316g00001 201 MobiDBLite consensus disorder prediction 1 27 - -
Stsc92316g00001 201 MobiDBLite consensus disorder prediction 1 32 - -
Stsc92316g00001 201 PRINTS Ethylene responsive element binding protein signature 73 93 IPR001471 GO:0003700|GO:0006355
Stsc92316g00001 201 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Stsc92316g00001 201 MobiDBLite consensus disorder prediction 128 151 - -
Stsc92316g00001 201 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Stsc92316g00001 201 CDD AP2 35 92 IPR001471 GO:0003700|GO:0006355
Stsc92316g00001 201 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Stsc92316g00001 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 162 - -
Stsc92316g00001 201 MobiDBLite consensus disorder prediction 181 201 - -
Stsc92316g00001 201 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Stsc92316g00001 201 SUPERFAMILY DNA-binding domain 34 93 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92316g00001 Stsc-Chr92316 686 1437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92316g00001 7 179 AP2-EREBP Transcription Factor Family AT1G01250 58.382 5.74e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc92316g00001 AP2 5.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92316g00001 K09286 - gmx:100806544 215.312