Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92304g00001 ATGAAACCTTCCATAATAACATGCTCTCTTCTAATCATCTTCCTCCTCTTCACTTCCACCATCTCAGCCTACACCTTCAAGGGCTACATCACTCCCAATTTCAGTGCCTCATTCCTCAAATTCATTGATGACTCAGGCACCTTCTTAACATCTCCAAATGGAACATTCAAGGCTGCAGTATTCAACCCTGGTGCCCAGCAAACCAGATTTTATCTCTGCATAATCCATGTTGGATCAAGCACCATCACTTGGTCTGCCAACCGCAACCGCGCCGTCTCCGACTCCGGTCAAATGAGTCTAACCCTTAAAGGGATAACAATTTCTGATAGAAATGGAAGCAATCCTGTATGGTCAACTCCACCATTGAGCTCACAAGTTGATAGGCTTGTCCTCACTGACATGGGCAACCTCGTACTCCTTGATCCTTCCAATGTTTCTCTTTGGGAAAGTTTTCGCTACCCAACGGACACAATTGTAACCGGTCAGCGTTTATCTGTTGGATCATCTTTGTCAAGTTCTTCATCAGATTCAGATTTGTCCCCTGGAAACTACAACCTCACAATCACTTCCTCTGATGCAATCCTCCAATGGTTTGGACAGACATATTGGAAACTTTCAATGGACACAAAAGCGTATAAGAATTCATTAAGCACGGTGGAGTACATGGCTGTGAACAGAACAGGATTCTACCTATTTGGACGTGATGGAACAGTTCCAGTGTATCTGGTATCCCTACCGGTATCGAATTTTCGAGTAGCTACATTGGATAAGTATGGCCATTTTATAATCAAAAGTTTCTCTTCCGGAACCGGTTGGAAGCAGGAATTTGTTGGGCCAGATGATGGGTGCGGAACACCCTTAGCTTGTGGCAGAGTTGGTTTATGCACTGATTATGATGATACCTCCTCCTCCTCCTCTTCTTCTTCTTCATCATCATCTTCACCTGTTTGTTCTTGTCCCCAAAATTTTCGAGTAGGTTCAGGTAACTCTGGTGGTTGTGTTCCAAGCAACGGTTCGTATTCCTTACCATTTTCTTGTAACAACAACCAATCAAATTCTTCTTCAGTTGTTTCATTCCTGAATCTTGGAAATGGTTTGGGCTACTTTCACAACATCTACTCCCATCCTGTTATGGACGGTGTGGATTTATCTTCGTGTCAAGATCAATGTTCCAAGAATTGTTCATGCTTGGGAGTTTTCTATAGAAACTCATCTGGATCATGCTATGTGATTGAAAACGAGTTGGGGTCAATTTTGTCAAGTAACAATAATGGAGCCAATCAAGACATGTTTGGATTCATCAAGGTTTCTATAGGATCCACAACCACCAACGATGGCGACACTTCTCAAGATGGCGGCGCCCAGTTTCCGGTGGCAGCCGCCGTGTTGTTACCTGTTACTGGCTTCACTCTCTTGGTGGCCTTTCTTTTCTTCTGGTGGAGAAGATCCATCAAAAGTTCCAAAAGACAAGATTTGAACAAATTTGGAAAAACTAATAATAATAATAATAACAATCCTCATTCTTCCGGAGACCTTGATGCCTTCTACATCCCGGGTTTACCGAGAAGATTCGACTACGAGGAACTCGAAACGGCCACCGATGATTTCAAGACTCTGATCGGCTCCGGTGGTTTTGGTACGGTCTACAAAGGAGTTCTCTCCGACAACGCCGTCGTGGCGGTCAAGAAAATAGTCAACATAGGAGTACAAGGCAAGAAAGACTTCTGTACAGAGATTGCTGTCATTGGAAACATCCATCATGTCAATCTTGTCAAGCTAAAAGGCTTTTGCGTCCAAGGGAGGCACCGGTTTTTGGTGTATGAATACATGAATCGTGGCTCCCTCGACCGAACGTTGTTCGGTGGAGGGCCACCGTTGGAATGGCAAGAGAGGTATGACGTGGCATTGGGGACGGCGCGTGGCCTTGCCTACCTTCATGGCGGGTGTGAGCATAAGATTATACACTGCGATATCAAACCTGAAAATATTCTTTTACAAGATCATTTTCAGGCTAAGATATCGGATTTTGGACTATCAAAACTTCTTAGCCCTGAACAATCAGGGCTATTCACAACGATGCGAGGTACTCGTGGGTACCTCGCTCCAGAATGGCTCACGAATTCCGCTATCACGGAAAAGACTGACGTGTATAGTTTTGGTATGGTACTCCTCGAACTTATAAGCGGAAGGAAAAATTGTTATTTCAAATCAAGGAGTCATAGTGTGGACGAGGATAGCAATAGCGGCGGAAGAGGAGGAGGAGGCGGCGGCCATAACTCTTCGTCGTCTACCACGCCGGGGTTGCTTTATTTCCCTTTGTTGGCATTGGAGAAGCATGAAGAAGGGAGCTACATGGATCTTGCTGATCCAAGATTAGAAGGGCGTGTGACGAATGAGGAGGTGGAGAAGCTTGTGAGGATTGCTTTGTGCTGTGTCCATGAAGAGCCGGCGTTGAGGCCGAACATGGCGGCGGTTGTCGGGATGTTGGAAGGTGGTACGGCGTTGCCGCAGCCGAGGATAGAGTCTTTGAACTTTTTAAGGTTTTATGGTCGTAGGTTTACGGAGGCTTCAATGATAGGTGAGGAGAATGATGACAATGGAGGAACACCACAAGGTAATTCTTCAAGCATGACAAGTGGTGGCTCTCAAGCTGCTTTAGTTTCTCACATATCTTCACAGAGTATCTCAGGGCCAAGATAG 2700 0.453 MKPSIITCSLLIIFLLFTSTISAYTFKGYITPNFSASFLKFIDDSGTFLTSPNGTFKAAVFNPGAQQTRFYLCIIHVGSSTITWSANRNRAVSDSGQMSLTLKGITISDRNGSNPVWSTPPLSSQVDRLVLTDMGNLVLLDPSNVSLWESFRYPTDTIVTGQRLSVGSSLSSSSSDSDLSPGNYNLTITSSDAILQWFGQTYWKLSMDTKAYKNSLSTVEYMAVNRTGFYLFGRDGTVPVYLVSLPVSNFRVATLDKYGHFIIKSFSSGTGWKQEFVGPDDGCGTPLACGRVGLCTDYDDTSSSSSSSSSSSSSPVCSCPQNFRVGSGNSGGCVPSNGSYSLPFSCNNNQSNSSSVVSFLNLGNGLGYFHNIYSHPVMDGVDLSSCQDQCSKNCSCLGVFYRNSSGSCYVIENELGSILSSNNNGANQDMFGFIKVSIGSTTTNDGDTSQDGGAQFPVAAAVLLPVTGFTLLVAFLFFWWRRSIKSSKRQDLNKFGKTNNNNNNNPHSSGDLDAFYIPGLPRRFDYEELETATDDFKTLIGSGGFGTVYKGVLSDNAVVAVKKIVNIGVQGKKDFCTEIAVIGNIHHVNLVKLKGFCVQGRHRFLVYEYMNRGSLDRTLFGGGPPLEWQERYDVALGTARGLAYLHGGCEHKIIHCDIKPENILLQDHFQAKISDFGLSKLLSPEQSGLFTTMRGTRGYLAPEWLTNSAITEKTDVYSFGMVLLELISGRKNCYFKSRSHSVDEDSNSGGRGGGGGGHNSSSSTTPGLLYFPLLALEKHEEGSYMDLADPRLEGRVTNEEVEKLVRIALCCVHEEPALRPNMAAVVGMLEGGTALPQPRIESLNFLRFYGRRFTEASMIGEENDDNGGTPQGNSSSMTSGGSQAALVSHISSQSISGPR 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92304g00001 899 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 42 838 - -
Stsc92304g00001 899 Gene3D Transferase(Phosphotransferase) domain 1 610 837 - -
Stsc92304g00001 899 CDD B_lectin 45 154 IPR001480 -
Stsc92304g00001 899 CDD STKc_IRAK 540 831 - -
Stsc92304g00001 899 SUPERFAMILY Protein kinase-like (PK-like) 512 829 IPR011009 -
Stsc92304g00001 899 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 46 152 - -
Stsc92304g00001 899 MobiDBLite consensus disorder prediction 859 899 - -
Stsc92304g00001 899 ProSitePatterns Protein kinases ATP-binding region signature. 540 563 IPR017441 GO:0005524
Stsc92304g00001 899 MobiDBLite consensus disorder prediction 864 899 - -
Stsc92304g00001 899 Pfam D-mannose binding lectin 81 167 IPR001480 -
Stsc92304g00001 899 SMART blect_4 40 154 IPR001480 -
Stsc92304g00001 899 Gene3D Phosphorylase Kinase; domain 1 513 609 - -
Stsc92304g00001 899 FunFam Serine/threonine-protein kinase 610 840 - -
Stsc92304g00001 899 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672|GO:0006468
Stsc92304g00001 899 FunFam serine/threonine-protein kinase PBS1-like 503 609 - -
Stsc92304g00001 899 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 205 IPR036426 -
Stsc92304g00001 899 PIRSF SRK 2 885 IPR024171 GO:0004674
Stsc92304g00001 899 MobiDBLite consensus disorder prediction 740 764 - -
Stsc92304g00001 899 ProSiteProfiles Protein kinase domain profile. 534 840 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc92304g00001 899 ProSiteProfiles PAN/Apple domain profile. 346 435 IPR003609 -
Stsc92304g00001 899 Pfam Protein kinase domain 537 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc92304g00001 899 ProSiteProfiles Bulb-type lectin domain profile. 34 152 IPR001480 -
Stsc92304g00001 899 Gene3D - 43 152 IPR036426 -
Stsc92304g00001 899 SMART serkin_6 534 829 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92304g00001 Stsc-Chr92304 482 3440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92304g00001 517 838 Receptor kinase-like Gene Family AT5G20050 42.687 3.25e-76 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc92304g00001 Pkinase 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92304g00001 - - qsa:O6P43_015213 1124