Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92298g00003 ATGGAAAGGCAAAGGAGGAAACAAATGGCTACCCTTCATGCTTCCCTTAGATCCCTTCTCCCTCTTCATTTCATCAAGGGAAAGCGTTCGATACCAGATCAAATAAAGGAGGCAGTGAATTACATAAACCAGCTTCAGAATAATGTGAAGGAACTCACTGCCAAGAGGGATAAACTTAAGAAACTCTCTTCATCATCAATAATAACAACTAATTCCCTGGCCCATGTTGTTGTTGCTGAAAACCCTCATGACAAAAACCATGTCGCTGCCGGTTCTTCTGCAAGTTTCTCAGTCCAGTTGAATGATATTGGAGCTGATGATGATGAGGGAATGATTGAACTCGCCTGTTGCTGTAATTATTCCTACAGTAGGGAGCGAGAGGAACAAGTGGTTCCACTTTCAAAGTTGCTGAAATTAGTGCTTCAAGAGGGGCTCCATGTTGTTTCTTCCCTTTCAACTCAACTCAATAATGCAACACTCATCCACACTCTCCACTGTCAGGTTCATTCGGATCCGTTATTATCCACCATATATATATACTTCTCTGTTTTATTTAATTTATTGTATACACTTACTCTTAATGCAACAATGTATATTATTTTAACATTAAATTAA 615 0.3902 MERQRRKQMATLHASLRSLLPLHFIKGKRSIPDQIKEAVNYINQLQNNVKELTAKRDKLKKLSSSSIITTNSLAHVVVAENPHDKNHVAAGSSASFSVQLNDIGADDDEGMIELACCCNYSYSREREEQVVPLSKLLKLVLQEGLHVVSSLSTQLNNATLIHTLHCQVHSDPLLSTIYIYFSVLFNLLYTLTLNATMYIILTLN 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92298g00003 204 Pfam Helix-loop-helix DNA-binding domain 1 46 IPR011598 GO:0046983
Stsc92298g00003 204 CDD bHLH_AtORG2_like 2 62 - -
Stsc92298g00003 204 Gene3D - 1 74 IPR036638 GO:0046983
Stsc92298g00003 204 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 45 IPR011598 GO:0046983
Stsc92298g00003 204 Coils Coil 35 62 - -
Stsc92298g00003 204 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 62 IPR036638 GO:0046983
Stsc92298g00003 204 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92298g00003 Stsc-Chr92298 2575 3685 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92298g00003 2 174 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 37.572 5.54e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc92298g00003 HLH 6.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92298g00003 - - gmx:100804315 123.635