Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92296g00002 ATGGGAGTAACGAAGCTAATGAACACACCAAAGAAGCTTCTCTTCTTGTTCCACAATGAAAACCATGGATCAAGAAAGAAAGTGGAGCTCAAATACATAGCAAATGACTCAAAAAGAAGGGCAACACTGAAGAAAAGAAAAGGTGGTCTGATAAAAAAGGTTGATGAGATTAGCACTCTTTGTGGGGTTGATGCTTGTGCTATAATGTACACCCCCAACGATCCACGGCCGGAGGTATGGCCGTCGCCGTCGGAGGTGACTCGGATGATCTCTAGATTTAAGGAAATGCCTGAGTTGGAACAAAGCAAGAAGATGATGTCTCAAGAGAGTTTCTTGAGACAGAGGATTCAGAAAGCTCAAGATCAACTGAAAAAACTAAAGAATGAGAATAGGAAGAAAGAGATGAGCAATCTCATGTTCCAAGCCTTAGGTCATGGTGGTAGCTCCCAGATTCTTGAAAATGCCACCATGATTGATCTCAATGATCTTGCATGGATCATTGATCAAAATATCAAGGAGATCAACAAGAAAATTAGCAAGCTTGAAGGGCAAGAAGGGACTAGTAGTAACAACAACAATGGAGGAGTGGACAATAATGTCATCAATGGTGGTGTGTTTCCATTTGTGGATGCTGCTAATGATGGCCAAAATGATTATCGCCCTGCCACATTAAATCCTTGA 681 0.4156 MGVTKLMNTPKKLLFLFHNENHGSRKKVELKYIANDSKRRATLKKRKGGLIKKVDEISTLCGVDACAIMYTPNDPRPEVWPSPSEVTRMISRFKEMPELEQSKKMMSQESFLRQRIQKAQDQLKKLKNENRKKEMSNLMFQALGHGGSSQILENATMIDLNDLAWIIDQNIKEINKKISKLEGQEGTSSNNNNGGVDNNVINGGVFPFVDAANDGQNDYRPATLNP 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92296g00002 226 SMART madsneu2 23 82 IPR002100 GO:0003677|GO:0046983
Stsc92296g00002 226 FunFam agamous-like MADS-box protein AGL80 35 119 - -
Stsc92296g00002 226 Gene3D - 35 121 IPR036879 GO:0003677|GO:0046983
Stsc92296g00002 226 SUPERFAMILY SRF-like 25 117 IPR036879 GO:0003677|GO:0046983
Stsc92296g00002 226 PRINTS MADS domain signature 45 60 IPR002100 GO:0003677|GO:0046983
Stsc92296g00002 226 PRINTS MADS domain signature 25 45 IPR002100 GO:0003677|GO:0046983
Stsc92296g00002 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 32 74 IPR002100 GO:0003677|GO:0046983
Stsc92296g00002 226 ProSiteProfiles MADS-box domain profile. 23 73 IPR002100 GO:0003677|GO:0046983
Stsc92296g00002 226 CDD MADS_SRF_like 25 107 IPR033897 GO:0000981|GO:0000987|GO:0045944
Stsc92296g00002 226 Coils Coil 109 136 - -
Stsc92296g00002 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 25 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92296g00002 Stsc-Chr92296 4476 6731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92296g00002 24 200 Type I MADS-box Gene Family AT5G48670 48.333 1.86e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc92296g00002 SRF-TF 1.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92296g00002 - - aip:107644294 290.812