Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92293g00001 ATGGCTGATGAGAATGTAAAGTGTCCATCCTCTTTTGAGTGTGGGAGTCTTGGCACCATCAGGTTTCCTTTCACAAACCAACACCACTCACGCTGCGGTGTATTGGCAATCCATGGCTGTGATGATCCAAACCCAGATGCCCCCAAATTCATCCAACCAACCAACACATCTCCAAGGTTTGATGTTTTATACGTGGAACCTCATACCATAACCATCAAAGATACTAATATAACTCCCTATTTGAGAACCAAAAGTTGCAAAACATTCAGCAACAACGTAAGTGTTCCTCAGAGTCCCAGTACCTCTCCTTTAGGGTCTTCGTACATCAAATATAATATAACCCTCTTCAGATGCAACAAGTCCCTCACTCTCAACCTTCCCGGGCGTTTTTATAACTATAGAAAGTGTCCAGAGTACAATATCTACTATGGCCCACCTAATGAGGAAATTCCTAAGGAATTCCGGTGGCCAACAAATTTAACAGCATGTTCCAATATTCAGTTACCGTTAAGAGACGAGTCAGATAGTAATGATCCATTTTCGTTTCTATATGATGAGATGCAAGTGGAAGTACTATTATCTGAAGACTGTGCCAAGTGTGTTCGCCACCAAAGAGGTCAATGTCAACTTGACACCCAAGCCAAATTCTTTTGCGCCAAAGAGAAAAGATCGGCTCAAAAGCTAGGACTAGGTATTGCACTCCCAATCCTTACTATAATTGGGTTGTTGCTGATTGTGTGGCGTTGCAAAGCCAAATACGGTGTTGTTTTTTACTCAAAACCAGAACCAGAGAGTTGCAGTATCTACTTTGGGGTCCCTGTTTTTTCCTATAAGGATCTTCAAGTCGCTACAAAATGTTTTGACTCTTCAAGAGTTCTTGGTGATGGAGGCTTTGGCACTGTTTACTATGGAAAACTCAAAGATGGACGTGAAGTTGCCATCAAGCACTTATATGAGCACAACTGTCGGCGATTAGAACAATTCATGAATGAAGTTAAGATCCTAACACGTCTGCGACATGCAAATCTTGTGTCCCTTTATGGCTGCACTTCACATCACAGCCATGACTTGTTGCTTGTTTATGAATACATTTCAAATGGCACTTTAGCAAGTCATCTGTACCATGGATCATCAAGGTCTAGCTTCCTGCCTTGGCCTATTAGAATGAAAGTTGCCATAGAAACTGCAACTGCATTGGCTTATCTCCATGCTTCAGACATCATTCACCGCGATGTTAAGACCAACAACATTCTTCTAGACAACAGTTTTTGTGTTAAGGTTGCGGATTTTGGGATGTCAAGATTGTTTCCGAACGATGTGACACATGTATCCACAGCTCCACAAGGCACTCCTGGCTATCTTGATCCAGAATATCACCAATACTATCAGCTTACGAGCAAGAGTGATGTGTATAGTTTCGGGGTTGTGCTCGTTGAGCTTATCTCTTCTAAGCCTGCAGTTGATATGAGTAGGCATAAGGATGAGATTAGCTTGGCGAATCTAGCCTTAAACAAGATTAGAAAAGGTGCAATTGGGGAGCTTGTTGATCCTTTCCTTGGGTTTGAGGCAGATAGTGGAGTTAGAAGGGAAATAGTTTTGGTGGCAGAATTGGCATTTCAGTGTTTGCAAAGGGACAGAGAATTGAGGCCGTCCATGGAAGAGGTGTTGGAGGAACTGAGGAGAATAGAGAGTGGGAAGGAAGAGGCTGAGGTGTCACATGGTGATGTGCATTCAGTGGAAGATAGTGAAGGAGCCATGAAAGTGTTGAATGATATGAAGGAAACACCTTCGCCTAAGGCAGTGACTGATAAGTGGGATAGTGAATCATCATCTACTACTATACACCCAATATCATTGCTCAGTCAACCAACCAATCTAATGTTGATCACTTCTTCGGATTAG 1902 0.4248 MADENVKCPSSFECGSLGTIRFPFTNQHHSRCGVLAIHGCDDPNPDAPKFIQPTNTSPRFDVLYVEPHTITIKDTNITPYLRTKSCKTFSNNVSVPQSPSTSPLGSSYIKYNITLFRCNKSLTLNLPGRFYNYRKCPEYNIYYGPPNEEIPKEFRWPTNLTACSNIQLPLRDESDSNDPFSFLYDEMQVEVLLSEDCAKCVRHQRGQCQLDTQAKFFCAKEKRSAQKLGLGIALPILTIIGLLLIVWRCKAKYGVVFYSKPEPESCSIYFGVPVFSYKDLQVATKCFDSSRVLGDGGFGTVYYGKLKDGREVAIKHLYEHNCRRLEQFMNEVKILTRLRHANLVSLYGCTSHHSHDLLLVYEYISNGTLASHLYHGSSRSSFLPWPIRMKVAIETATALAYLHASDIIHRDVKTNNILLDNSFCVKVADFGMSRLFPNDVTHVSTAPQGTPGYLDPEYHQYYQLTSKSDVYSFGVVLVELISSKPAVDMSRHKDEISLANLALNKIRKGAIGELVDPFLGFEADSGVRREIVLVAELAFQCLQRDRELRPSMEEVLEELRRIESGKEEAEVSHGDVHSVEDSEGAMKVLNDMKETPSPKAVTDKWDSESSSTTIHPISLLSQPTNLMLITSSD 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92293g00001 633 Pfam Protein kinase domain 289 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc92293g00001 633 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 7 610 IPR044652 GO:0004672
Stsc92293g00001 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Stsc92293g00001 633 Coils Coil 552 572 - -
Stsc92293g00001 633 MobiDBLite consensus disorder prediction 593 613 - -
Stsc92293g00001 633 Gene3D Phosphorylase Kinase; domain 1 261 363 - -
Stsc92293g00001 633 SUPERFAMILY Protein kinase-like (PK-like) 269 558 IPR011009 -
Stsc92293g00001 633 FunFam Wall-associated receptor kinase-like 20 364 572 - -
Stsc92293g00001 633 Gene3D Transferase(Phosphotransferase) domain 1 364 576 - -
Stsc92293g00001 633 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524
Stsc92293g00001 633 SMART serkin_6 287 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc92293g00001 633 ProSiteProfiles Protein kinase domain profile. 287 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92293g00001 Stsc-Chr92293 801 3139 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92293g00001 12 611 Receptor kinase-like Gene Family AT1G25390 45.907 4.28e-162 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc92293g00001 Pkinase 4.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92293g00001 - - aprc:113871893 754.592