Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92276g00001 ATGGGTGTACAAGCAACCGGAGGAACCGGTAATTGTCAATATGCTGGTTGTGTTTCTGACCTAAACGATAACTGTCCAATGGAGCTACAGGTAAAAGATGTTACCGGTTTGGTGGTTGCATGTAAGAGCATGTGTGCGGCATTTAACACCGAAGAGTATTGTTGCATCGGCGAGCACGCAACGCCACAAACGTGCCCACCTACAAATTACTCAAAAATGTTTAAGGGTGCATGTCCAAGAGCTTATAGTTACGCTTATGATGATGCTTCAAGCACTTGGGGTTGGGAGTGGCTTGGGTATGGCCAAGCTCTATGGTTGGTCTTAATTTCTTGGGCAGAGGCACTGGCGGGTAGGGGGAATATGAGGGCATGGCTGATGGCTGCGTCTCTTCTTTGCGACGTGTTGCTTGGTTCTTCGTCCTCATCCCTCTCTTCGTTTTCGTTCTGTATTTCTCAATTCGCAACTGGTTGTGCTAGAATGGAAGCTTCGAGTTCAGATCCATCAGTGGAATTGTCTTCGGATCATTCATGTGAATCAAACAACACAGAAGAGTTTTCATGTGATGTTGATGAGCAGTATGTGCTAAAGGTTGGCATGCTTTTTCAATCACTTGAGGAAGCTAGGAATTTCTACAGGGATTATGCTAAACTTGCAGGCTTTGCTATAAGGATAAGGAACACAAATAAGAGTAATAAATCAAATGAGATATTGAACCAGCTGCTTTCATGTAATAGAGAAGGAAAAAGAAGGTCGGATGTGCCAGTTTCTGAGAAGACGAATGCAGTATACGCTGCTAATTGTCCAGCCAGAGTTCATGTGCATCATTTGAAGATAATTGGACTCTGGGAGATTTCGAAAGTGGTTTTGGGACACTCACACGCATGCTGTCCAAATCATGCATCAATGTTTCCTCAATACTGA 921 0.4397 MGVQATGGTGNCQYAGCVSDLNDNCPMELQVKDVTGLVVACKSMCAAFNTEEYCCIGEHATPQTCPPTNYSKMFKGACPRAYSYAYDDASSTWGWEWLGYGQALWLVLISWAEALAGRGNMRAWLMAASLLCDVLLGSSSSSLSSFSFCISQFATGCARMEASSSDPSVELSSDHSCESNNTEEFSCDVDEQYVLKVGMLFQSLEEARNFYRDYAKLAGFAIRIRNTNKSNKSNEILNQLLSCNREGKRRSDVPVSEKTNAVYAANCPARVHVHHLKIIGLWEISKVVLGHSHACCPNHASMFPQY 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92276g00001 306 Pfam Thaumatin family 9 93 IPR001938 -
Stsc92276g00001 306 SMART tha2 1 94 IPR001938 -
Stsc92276g00001 306 PANTHER OS03G0233200 PROTEIN 5 93 IPR001938 -
Stsc92276g00001 306 Pfam FAR1 DNA-binding domain 209 296 IPR004330 -
Stsc92276g00001 306 ProSiteProfiles Thaumatin family profile. 1 92 IPR001938 -
Stsc92276g00001 306 SUPERFAMILY Osmotin, thaumatin-like protein 1 93 IPR037176 -
Stsc92276g00001 306 Gene3D Thaumatin 1 96 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92276g00001 Stsc-Chr92276 1319 3955 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92276g00001 4 93 Receptor kinase-like Gene Family AT5G38280 43.478 7.03e-18 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc92276g00001 FAR1 1e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92276g00001 - - aip:107605729 168.703