Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92269g00002 ATGGCTAGCTTGGCACCAGAAGGATCACAATTTGATGCTCGCCAATTTGATGCTAAGATGAATGAGTTGGGGATTGTGCCTTTCATCAAGGAACTTGATGTGATTCAGCAAGCACAATTTGGAACTGGAAAAACTGCTACTTTTTGCTCTGGTATTTTGCAGGAGCTTGATTACACCTTAGTTGAATGCCATGCTCTAGTTCTTGCTCCCACTTGTGAACTTGCACAACAAATTGAGAAGGTCATGAGAGCACTAAGTGACTATCTTGGGGTTAAGGTTCATACTTGTGTATTATTGCCACAAGCTGTGGCTTTTGATCCACATGCTATTCTAGAGGAAGTTCTATCACTTTTCTCAGGAAAGTCTAAAGAAAAAGGAATTGAGGTGAGACCCTCTCTTTCAGCTACCTTAGTTCTATATCTCACATAA 429 0.4079 MASLAPEGSQFDARQFDAKMNELGIVPFIKELDVIQQAQFGTGKTATFCSGILQELDYTLVECHALVLAPTCELAQQIEKVMRALSDYLGVKVHTCVLLPQAVAFDPHAILEEVLSLFSGKSKEKGIEVRPSLSATLVLYLT 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92269g00002 142 PANTHER RNA HELICASE 25 97 - -
Stsc92269g00002 142 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 142 IPR014001 -
Stsc92269g00002 142 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 96 IPR027417 -
Stsc92269g00002 142 Gene3D - 18 128 IPR027417 -
Stsc92269g00002 142 Pfam DEAD/DEAH box helicase 29 96 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92269g00002 Stsc-Chr92269 3326 4076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92269g00002 1 97 Eukaryotic Initiation Factors Gene Family AT3G13920 54.930 2.56e-43 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92269g00002 K03257 - csin:114262399 150.599