Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92268g00001 ATGCTTGATAGCCATAGCTATTCACTCAAGGACAAGATCAAGAAGAAGGTTTTAGGATGGGTTCTTGGTGCTTTAGTCGTGGCAACACTTGCCGTGCCAATCTTTGGTTTCATACTCCACTTCATCAACAAAAAAGATTTGGCATTTTTAAAGAGAGAAGACTGTTTGGAAAATTTGGAATGCATTGGAAGAGGTGGTGCTGGAGAGGTTTACAAGAATGGAAATCTTGAAGATTTTCTAAAAAGAGATCAAAAGGGAAGAAACAAGTTGGATTGGCTTTTAAGGTACAAGATCAGTATTTGGGTTGGTGTTGGTCTTGAGTACCTTCATATAAATTATAGACCTAGAATCATTCATCAAGATCTCAAATCGGGAAACATTCTTCTCGATGATGATATGGAGGCGAGGATAGCAGATTTCGACCTTGCCATGGCAATGCCTGATGATCAGTCACAGGTTGTTCTTTCCAATGTTGGTGATATCATCGGTTATATTGCCCCGAAGTATTACACAATGGGAGTATTCAATGATAAATGTGACATTTACAGTTTCAGTGTGATGCTTGGTGTTTCAGTGACAGGTAAGTTTTCCCTTGGTGAATTCTTTTGTCAAGAATGTGCAATTAGTTTGGTACATTGGATGAGGAATATAACATCAGAAAATTTGAATGTGGTGATTGATCCAATTCTTGTTGGGAATGGATTTGAAAATAGGATGTTCTGCGTTCTAAGGATTGGAAGCTTGTGCACTAGAGGTGTTCATGGCCCAGACCGGCTCAAGGCTTGGCCCAGACCCAATGAAATTTGGGTTATTTTTTGCCTGGCCTCAAAGTGGTCTGAACTAGGGCCGAAATCAATCAAACAAACCCAATAA 873 0.3975 MLDSHSYSLKDKIKKKVLGWVLGALVVATLAVPIFGFILHFINKKDLAFLKREDCLENLECIGRGGAGEVYKNGNLEDFLKRDQKGRNKLDWLLRYKISIWVGVGLEYLHINYRPRIIHQDLKSGNILLDDDMEARIADFDLAMAMPDDQSQVVLSNVGDIIGYIAPKYYTMGVFNDKCDIYSFSVMLGVSVTGKFSLGEFFCQECAISLVHWMRNITSENLNVVIDPILVGNGFENRMFCVLRIGSLCTRGVHGPDRLKAWPRPNEIWVIFCLASKWSELGPKSIKQTQ 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92268g00001 290 Gene3D Transferase(Phosphotransferase) domain 1 71 257 - -
Stsc92268g00001 290 SMART serkin_6 56 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc92268g00001 290 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 72 250 - -
Stsc92268g00001 290 SUPERFAMILY Protein kinase-like (PK-like) 69 220 IPR011009 -
Stsc92268g00001 290 Pfam Protein tyrosine and serine/threonine kinase 69 188 IPR001245 GO:0004672|GO:0006468
Stsc92268g00001 290 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Stsc92268g00001 290 ProSiteProfiles Protein kinase domain profile. 1 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc92268g00001 290 FunFam Os07g0541700 protein 71 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92268g00001 Stsc-Chr92268 1802 2922 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92268g00001 69 250 Receptor kinase-like Gene Family AT2G31880 51.366 1.39e-59 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Stsc92268g00001 PK_Tyr_Ser-Thr 1.5e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92268g00001 - - sind:105157311 209.149