Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92251g00001 ATGGCGAATGAAGATCATAACAAAGATCAATTTCATCACTTTGAGCCTTTCTATTACAACAACAACCACCATGGACATGAACTCAACCAATCAAACTTTCCCTTCTCATCACAAAATCATCATCAAGAAGGGTTTATTGATAACAACATAATCACAAGCTTCAGTGATTGTTTACATGGTAATTCCATGGATTATAACACTCTCTCAAGAGCCTTTGACTTGTCTTGTTCTTCACCTGAAGTGATCTCATCTTCCATTGATGATAACAACAACAAGAAGCAGCAACAACAAATACTACTGAATCATAATTCTTCAGTTTCTTCTTCTTCTAATGAAGCTGATGCTTCAGTCACTGAAGAAGACTCAGCCAAAAGTAGCAAGAAACATGAGAAGCAAGATCAAGAAGATGAAGAAGAAGATGAAGATGCAAAGTCTAAGAAAGAGAATAACAATAAGGCAAAGAAGAAAGAGAAAAAGCCAAGAGAGCCAAGATTTGCATTCATGACCAAAAGTGAGATTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGCCAGAAAGCAGTGAAAAATAGTCCATACCCAAGGAGCTACTATCGATGCACTACTCAGAAGTGCATTGTGAAGAAGAGAGTGGAGAGGTCATACCAAGACCCATCAATTGTGATCACAACATATGAAGGGCAGCACAACCACCACTGCCCGGCCACCCTCCGCGGCAACGCCGCCGCCATGTTTTCTTCTTCACCTTCTCTTTTTGGCTCCCCATCCCTCATAAGGCCAACAACTTTACCCCAAGATTTCCTCTCTCAATTCCTTCCAACCTACACTAACAATAATAATAATAATAGTCATCAATTAGCCCATAATAATATTAATTATAATAACAATAATCACAATCAAAACCCCATTTTCCAACTAAACCTTGGCCATAATCATCATTATCCTCCTCCTCCACCACCACCACCACAAGCGCAACAACAACATCAGCTTCATCAATTCCCTCATGACTATGGCTTGTTGCATGACCTACTACCTTCATTCCAAGGCAAACAAGAACCATAA 1068 0.3933 MANEDHNKDQFHHFEPFYYNNNHHGHELNQSNFPFSSQNHHQEGFIDNNIITSFSDCLHGNSMDYNTLSRAFDLSCSSPEVISSSIDDNNNKKQQQQILLNHNSSVSSSSNEADASVTEEDSAKSSKKHEKQDQEDEEEDEDAKSKKENNNKAKKKEKKPREPRFAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCIVKKRVERSYQDPSIVITTYEGQHNHHCPATLRGNAAAMFSSSPSLFGSPSLIRPTTLPQDFLSQFLPTYTNNNNNNSHQLAHNNINYNNNNHNQNPIFQLNLGHNHHYPPPPPPPPQAQQQHQLHQFPHDYGLLHDLLPSFQGKQEP 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92251g00001 355 SMART WRKY_cls 176 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc92251g00001 355 MobiDBLite consensus disorder prediction 117 134 - -
Stsc92251g00001 355 FunFam WRKY transcription factor 57 162 236 - -
Stsc92251g00001 355 ProSiteProfiles WRKY domain profile. 171 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc92251g00001 355 Gene3D WRKY domain 162 237 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc92251g00001 355 MobiDBLite consensus disorder prediction 309 331 - -
Stsc92251g00001 355 MobiDBLite consensus disorder prediction 102 165 - -
Stsc92251g00001 355 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 53 299 IPR044810 GO:0003700
Stsc92251g00001 355 MobiDBLite consensus disorder prediction 102 116 - -
Stsc92251g00001 355 SUPERFAMILY WRKY DNA-binding domain 168 236 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc92251g00001 355 Pfam WRKY DNA -binding domain 177 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92251g00001 Stsc-Chr92251 8170 10822 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92251g00001 42 355 WRKY Transcription Factor Family AT4G18170 40.673 7.53e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc92251g00001 WRKY 7.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92251g00001 - - adu:107496496 424.861