Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92248g00002 ATGGGATCCAGTGGTGAATACTCTGCTTCCAAATTGCTTGAATCTCAAACTCACATATGGAATCACATTTTCAGTTTCATAAATTCCATTTCCCTCAAATGTGCAACTGACTTGGGAATTCCAGAAGCCATACACAACTATGGTCAACCCATGCCACTCTCAAAACTCATTTCATCCCTACAAATCCATCCCAACAAATCACAATTTGTCTATCGCTTGATGCGGATTTTGACTCATTCCGGCTTCTTCTCTAAACACATTTCTACAAAAGGGGAGGAGCAGGAATCGTGCTATTCGCTAACCGATGCATCCAAGTTGTTGCTCAAAGACCATCCCATGAGTCTTTTACCTTTCTTAACCGCCATGCTTGATCCAATTATAACAAAGCCGTGTTACGAGTTGCCAGCATGGTTCCAAAATGATAGTCCCACGCCGTTCTACATGACGCATGGGATGACGCTTTGGGATTATGCTGTCAAGGAGCCAAGGTTCAGTAAGTCCATCAACGACGCCCTGGCAACCGATACTCCATATATTACAAGTGCTTTGTTTGAGAAGTGTAAGGGTGTGTTTGAAGGGTTGGAGTCTTTGGTTGATGTGGGTGGAAACACAGGAACTATGGCTAAGGCTATTGCTGAGACATTTCCACAAATGGAGTGCACTGTGTTTGATCTTCCACATGTTGTTGATGGCTTGCAAGGAAGTGGGAATGTAAAATATGTTGGAGGAGATATGTTTGACTCATCAATTCCTACTTCTGATGCCATTTTGTTGAAGTTTGTATTGAATGATTGGGATGACGAGAAATGTGTCAAAATACTGAAGAATTGCAAGGAAGCAATCACAAGAAGCAAGGAAAGAAAAGGAAAAGTTATTGTCATTGAAATGGTGGTGGGTGATGACGATGGAAAGAGTAATGATGAAGATCATAAATCAATTGAAACACAACTTTTCTTTGATATGATGATGATGGTAGAAGTCATCGGAAAAGAGAGAAATGAAAAGGAATGGGCCAACATAATTTTCTCAGCTGGTTTCAGTGATTACAAGATACACTTCTCAGCTTTGGGAGTAAGATCTCTCATTGAAATGTTTCCATAG 1101 0.4078 MGSSGEYSASKLLESQTHIWNHIFSFINSISLKCATDLGIPEAIHNYGQPMPLSKLISSLQIHPNKSQFVYRLMRILTHSGFFSKHISTKGEEQESCYSLTDASKLLLKDHPMSLLPFLTAMLDPIITKPCYELPAWFQNDSPTPFYMTHGMTLWDYAVKEPRFSKSINDALATDTPYITSALFEKCKGVFEGLESLVDVGGNTGTMAKAIAETFPQMECTVFDLPHVVDGLQGSGNVKYVGGDMFDSSIPTSDAILLKFVLNDWDDEKCVKILKNCKEAITRSKERKGKVIVIEMVVGDDDGKSNDEDHKSIETQLFFDMMMMVEVIGKERNEKEWANIIFSAGFSDYKIHFSALGVRSLIEMFP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92248g00002 366 SUPERFAMILY "Winged helix" DNA-binding domain 10 112 IPR036390 -
Stsc92248g00002 366 Gene3D Vaccinia Virus protein VP39 108 366 IPR029063 -
Stsc92248g00002 366 PIRSF O-mtase 2 366 IPR016461 GO:0008168
Stsc92248g00002 366 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 363 IPR029063 -
Stsc92248g00002 366 FunFam Coniferyl alcohol 9-O-methyltransferase 3 107 - -
Stsc92248g00002 366 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 366 IPR016461 GO:0008168
Stsc92248g00002 366 PANTHER O-METHYLTRANSFERASE 13 350 IPR016461 GO:0008168
Stsc92248g00002 366 Pfam O-methyltransferase domain 132 347 IPR001077 GO:0008171
Stsc92248g00002 366 Gene3D - 2 107 IPR036388 -
Stsc92248g00002 366 FunFam O-methyltransferase ZRP4 109 366 - -
Stsc92248g00002 366 Pfam Dimerisation domain 31 78 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92248g00002 Stsc-Chr92248 7108 8888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92248g00002 30 365 Monolignol Biosynthesis Gene Families AT5G54160 32.941 1.86e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92248g00002 - - gmx:100794122 465.307