Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92226g00001 ATGGCTGCGGTTGCGGAGGTTCCCACTGATACTACAGCTCCAAATCGATTGGACTCAAAGCCAAAAACAAAGGCAAAATTTGATGAGTTCAATGTCCAAAATCTTGTTGACATTTTCACAAAACTAAACCCTTTGGCCAAGGAGTTCTTCCCTTCATCTTATTCTTACCATGATCACATTCATCATCAGGGTTATTATCAGTTCTCACCCAACAACTTTATGCCCAATAATAAGCCCTTTGATGGTGATAGTAACCAAAGGAACCGAAGGCAGAGGCGAGCTAATTTTAATCAAGTGGGCAAAAGGTTGAATGGACGAGTGAAGGCTCAGCGAGAGGATAGCGTTAAAAGAACAGTATATGTTTCTGATACTGATCAGCAAGTTACTGAGGAACGCCTTGCTGCCTTATTCAGCACTTGTGGGCAGGTAATTGACTGTAGAATTTGTGGTGATCCTCATTCAGTTCTTCGTTTTGCATTTGTGGAGTTCACAGATGAAGAAGGTGCAAGGGCAGCTTTAAGACTTGGTGGAACTGTGCTTGGATATTATCCCCTTAGGGTCCTTCCTTCAAAAACTGCTATCCTTCCCGTGAATCCTACATTTCTTCCTAGGTCAGCTGATGAGCGGGAAATGTGTACAAGAACTGTCTACTGTACAAATATTGACAAAAAGGTTTCTCAAACAGAAGTCAAGACTTTTTTTGAATCATCTTGTGGTGAGGTTACCCGGCTGAGGTTGTTAGGAGATCGTGTGCATTCAACTCGAATTGCTTTTGTTGAATTTGCAATGGCTGAAAGTGCCATCATAGCATTAAATTGTAGCGGGATGCTCCTAGGAAACCAGCCTGTCAGGGTGAGTCCTTCAAAGACACCGGTAAGGACAAGGGTTGCTCGTCCAACATCGCATTAA 909 0.429 MAAVAEVPTDTTAPNRLDSKPKTKAKFDEFNVQNLVDIFTKLNPLAKEFFPSSYSYHDHIHHQGYYQFSPNNFMPNNKPFDGDSNQRNRRQRRANFNQVGKRLNGRVKAQREDSVKRTVYVSDTDQQVTEERLAALFSTCGQVIDCRICGDPHSVLRFAFVEFTDEEGARAALRLGGTVLGYYPLRVLPSKTAILPVNPTFLPRSADEREMCTRTVYCTNIDKKVSQTEVKTFFESSCGEVTRLRLLGDRVHSTRIAFVEFAMAESAIIALNCSGMLLGNQPVRVSPSKTPVRTRVARPTSH 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92226g00001 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 290 IPR000504 GO:0003723
Stsc92226g00001 302 Gene3D - 202 296 IPR012677 -
Stsc92226g00001 302 Gene3D - 75 193 IPR012677 -
Stsc92226g00001 302 SMART rrm1_1 215 286 IPR000504 GO:0003723
Stsc92226g00001 302 SMART rrm1_1 118 188 IPR000504 GO:0003723
Stsc92226g00001 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 192 IPR000504 GO:0003723
Stsc92226g00001 302 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 39 296 - -
Stsc92226g00001 302 Pfam Ataxin-2 C-terminal region 38 53 IPR009818 -
Stsc92226g00001 302 CDD RRM1_CID8_like 115 194 IPR034823 -
Stsc92226g00001 302 MobiDBLite consensus disorder prediction 1 21 - -
Stsc92226g00001 302 SUPERFAMILY RNA-binding domain, RBD 204 295 IPR035979 GO:0003676
Stsc92226g00001 302 FunFam Polyadenylate-binding protein-interacting protein 11 82 194 - -
Stsc92226g00001 302 FunFam Polyadenylate-binding protein-interacting protein 10 208 286 - -
Stsc92226g00001 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 283 IPR000504 GO:0003723
Stsc92226g00001 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 182 IPR000504 GO:0003723
Stsc92226g00001 302 SUPERFAMILY RNA-binding domain, RBD 106 193 IPR035979 GO:0003676
Stsc92226g00001 302 CDD RRM2_CID8_like 210 291 IPR034825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92226g00001 Stsc-Chr92226 6588 11987 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92226g00001 118 286 Eukaryotic Initiation Factors Gene Family AT1G71770 28.488 3.03e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92226g00001 - - gmx:100779109 441.425