Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc92151g00004 | ATGGGCTCTGTGGCTACACCTCTTCTGATTAATCAATTTATTCTATTTCCTGCTGCTGCTACCAAAACCGTCAGGAACTCCAAATTGGGTGGGAGTTTCAACAAAATGTGTAGAAGTACAGAAAACGGAATACTCAGTTTCTCCTTTGCTGGTGGCAACCACATAGTTGGGGGTAACTTTGCAATCAAATCAAGTAAAGGAGTATCAAATTTGAAAACTGGGCAACAAGAAGGAACTTGGGAAGAACCAGATATTGACAGTGACAGTGAGTCTGATGATGAAGATGAGGAAGCTGAGGACGAGAACCTTGGATTTGAAAGCGATTGGGAGGAGGAAGAAATAAAGACTTCAGCTACTTCTGTTGTAAATATAAACTCAAGTGACACATCCGAGGATCATGTTAAGAGAGAGGTTGAACAGCTTTTGGACCCAGAAGAAAGAGCAATATTGCAACAGAATGTGACTCCTAACTTGGAAAAAATATCAACTAAAAAATGGAGCCCTCTGCACACTCTTGCTCTGTCAATGCAGATGAGTTGCATGGATAAGCTTCTTGAAAATGGTTTTGATATTGATTTCATTAATAAGGAAGGTCTCACTGCACTTCATAAGGCAATTATAGGTAAAAAAGAAGCGGTGATTAGCCATCTTTTAAGGAAAGGTGCAAGTCCTCATGTGAAGGATAAGGATGGAGCCACTCCACTTCATTATGCGGTTCAAGTTGGTGCAAAGCAAACTGTGAAGTTATTGATCAAGTATAATGTCGATGTCAATGTTGCAGATCATGAAGGTTGGACTCCATTGCACGTTGCTGTTCAAGGTAGAAACAGAGATATAGTGAAAATTTTATTACTCAATGGTGCAGATAAAACAAGGAAAACTAAGGATGGAAAAACAGCACTGGATCTATGCTTATGTTATGGAAAAGATTTCAAATCTTATGAGCTTGCTCAAGTAGTGAAGTTAGTTCCAGTTGACAGTGCTCTATGA | 990 | 0.3939 | MGSVATPLLINQFILFPAAATKTVRNSKLGGSFNKMCRSTENGILSFSFAGGNHIVGGNFAIKSSKGVSNLKTGQQEGTWEEPDIDSDSESDDEDEEAEDENLGFESDWEEEEIKTSATSVVNINSSDTSEDHVKREVEQLLDPEERAILQQNVTPNLEKISTKKWSPLHTLALSMQMSCMDKLLENGFDIDFINKEGLTALHKAIIGKKEAVISHLLRKGASPHVKDKDGATPLHYAVQVGAKQTVKLLIKYNVDVNVADHEGWTPLHVAVQGRNRDIVKILLLNGADKTRKTKDGKTALDLCLCYGKDFKSYELAQVVKLVPVDSAL | 329 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc92151g00004 | 329 | SMART | ANK_2a | 164 | 193 | IPR002110 | GO:0005515 | |
| Stsc92151g00004 | 329 | SMART | ANK_2a | 197 | 226 | IPR002110 | GO:0005515 | |
| Stsc92151g00004 | 329 | SMART | ANK_2a | 263 | 292 | IPR002110 | GO:0005515 | |
| Stsc92151g00004 | 329 | SMART | ANK_2a | 230 | 259 | IPR002110 | GO:0005515 | |
| Stsc92151g00004 | 329 | MobiDBLite | consensus disorder prediction | 71 | 133 | - | - | |
| Stsc92151g00004 | 329 | ProSiteProfiles | Ankyrin repeat profile. | 263 | 295 | IPR002110 | GO:0005515 | |
| Stsc92151g00004 | 329 | Pfam | Ankyrin repeats (3 copies) | 212 | 293 | IPR002110 | GO:0005515 | |
| Stsc92151g00004 | 329 | PRINTS | Ankyrin repeat signature | 231 | 246 | IPR002110 | GO:0005515 | |
| Stsc92151g00004 | 329 | PRINTS | Ankyrin repeat signature | 279 | 293 | IPR002110 | GO:0005515 | |
| Stsc92151g00004 | 329 | ProSiteProfiles | Ankyrin repeat profile. | 197 | 229 | IPR002110 | GO:0005515 | |
| Stsc92151g00004 | 329 | ProSiteProfiles | Ankyrin repeat region circular profile. | 230 | 261 | - | - | |
| Stsc92151g00004 | 329 | Gene3D | - | 127 | 231 | IPR036770 | - | |
| Stsc92151g00004 | 329 | ProSiteProfiles | Ankyrin repeat profile. | 230 | 262 | IPR002110 | GO:0005515 | |
| Stsc92151g00004 | 329 | ProSiteProfiles | Ankyrin repeat region circular profile. | 197 | 229 | - | - | |
| Stsc92151g00004 | 329 | SUPERFAMILY | Ankyrin repeat | 156 | 308 | IPR036770 | - | |
| Stsc92151g00004 | 329 | PANTHER | ANKYRIN REPEAT FAMILY PROTEIN | 119 | 321 | - | - | |
| Stsc92151g00004 | 329 | Gene3D | - | 232 | 313 | IPR036770 | - | |
| Stsc92151g00004 | 329 | ProSiteProfiles | Ankyrin repeat region circular profile. | 263 | 289 | - | - | |
| Stsc92151g00004 | 329 | MobiDBLite | consensus disorder prediction | 81 | 108 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc92151g00004 | Stsc-Chr92151 | 8884 | 12173 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc92151g00004 | 149 | 289 | Ion Channels | AT2G25600 | 32.624 | 9.72e-09 | 54.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc92151g00004 | - | - | lja:Lj0g3v0067589.2 | 434.491 |