Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92122g00002 ATGGTTCCAGTTATTTTAGCTGCAGAGGTTTCTGGAATAATTGATGATCTTGAGTGTACCACATTTGTCTTGGACTCTGCCGAAGAAGATGCTGGGAAAGTTGTTAGAGAGTTGCTTGAGCAAGATACAGATTCAATGGACGATTCTGCAGTTAAAGCTCTTCAGTTTGCAGCACCAAGACTTAACATTACATCAAAAAAGGCCATCTTAGTAGAGAAACGATATATTAAGAAGTTGCGAGATAAAATTGGAATGAATGACCAGAAAAAGAAGGCCATTCTGAAATTTCTTTGGTATATACTGGACAAGCACGGAAATCACATCATTGGGGAACAAATGGAGAAGGTCTATTCCCATAATGATGAACCAATGGCAACTGAGAACTCTAGCCACAATTCTCACCAAAGGCATCAAATCAAGTCTGATCAATGCATGCATTATGACCAGTATAGAACTCAGACTGGTGAATTTGGTAGAACTACAGCCCCTGAGGAGTATAAGTGTCCAATGTCGTCAAGATTGATGTATGATCCTGTTGTCATTCAGTCAGGTGTTACATATGAGAGGATGTGGATACAAAAGTGGTTTGATGAGGGTAACGATACATGCCCAAAAACTAGAAAAAAACTAGTGCATATGGGAATGACTCCTAATATTGCCATGAAGGACTTAATATCAAAATGGTGCAAAGACAATGGAGTCTCCATTTCTGACCCAAACAGGCTAGTCGGAGGTTTTCACTCATTGGAAACTTCAATGACTTCCATCAAGAGTTTTGGAAGTTACATAAATGATTTTAACTTGCCACTGGATCTTAGTAGCATGTCTCTTGGATCATTGGATACTAGTTACAATTCAGGTGTCTTGCATTCTAAGAACTCTAGTGGCTCAAATTTGAGGTCAATAATGACTAATGATGATTCTCACAAACATCAAGCTCAAGAACAGATACATGAAGCAAATTTGGAGCTCTTGTCCAAACTACATGATCTCCAATGGGATTCTCAATGCCAGGTCATTGAAGATGTGAAAGAAAATTTGAAAAACAATTACCAAGCTTTTTCTTCTGTGTCACCTCAGAATTTCACTGAACCCCTCATCAGATTTCTGAACAGTGCTTATGATCTGCATGATGTAAAAGCTCTCAGAGCTGGAATCCAGCTGCTGTTGGAATTTGTCAACAACTGCAGAAATGATCTGAGTAATTTAAGTGAAGATGTATTCACACTGTTGGCCAGTTTTCTTGATTCAGAAGTGACAGGGGAAGCTCTTGCAGTAATGGAAGAACTCTCTTGTTATTGGCATAGAAAAGCTAAAATAGCAGCATCCAGTGCACTCACTCCTGTTTTAAATATGGTTAATTCTGATAACAAAGAGTTCCAACGACAAGCCATTGTAATATTGTATAATTTATCCTTCAATGGTGAAGTTTGTCCCCTCATGCTATCTCTGGAGTGCATCCCAACATTGCTTCCATTTTTCAAAGACAGGTCCCTTTTGAGATACTGTATAGTTACATTGAAAAATCTTTGTGACACTAAAGAGGGTAGGAATTCTGCTGTTGAGACCAAGGGTTGCATATCTTCTGTTGTCGAAATACTTGACACAGGAAGCAATGAGGAAAAAGAACATGCACTAGAAATCCTAGTCTCTCTATGTTCTCAACGCATGGACTATTGTAGATTGGTTATGAGGCAGAATGCCATCCATCATCTTGCCTATATATCCAAGAATGGAAGCGACAGAGGACAGGCAACTGCATTGGAACTGCTCCGTCTCCTGGAAGATGTGGAAGATGATGATTCCCTTGAATCGAATCTCAACAACACTTCTGGAGATTCTAACATACAACCTCAAGAAAGGCAATCATCAAAAAGATCAGCATTTCTGAAGAAACTACCCTTCTTAAAATCCAACAGATGA 1923 0.3911 MVPVILAAEVSGIIDDLECTTFVLDSAEEDAGKVVRELLEQDTDSMDDSAVKALQFAAPRLNITSKKAILVEKRYIKKLRDKIGMNDQKKKAILKFLWYILDKHGNHIIGEQMEKVYSHNDEPMATENSSHNSHQRHQIKSDQCMHYDQYRTQTGEFGRTTAPEEYKCPMSSRLMYDPVVIQSGVTYERMWIQKWFDEGNDTCPKTRKKLVHMGMTPNIAMKDLISKWCKDNGVSISDPNRLVGGFHSLETSMTSIKSFGSYINDFNLPLDLSSMSLGSLDTSYNSGVLHSKNSSGSNLRSIMTNDDSHKHQAQEQIHEANLELLSKLHDLQWDSQCQVIEDVKENLKNNYQAFSSVSPQNFTEPLIRFLNSAYDLHDVKALRAGIQLLLEFVNNCRNDLSNLSEDVFTLLASFLDSEVTGEALAVMEELSCYWHRKAKIAASSALTPVLNMVNSDNKEFQRQAIVILYNLSFNGEVCPLMLSLECIPTLLPFFKDRSLLRYCIVTLKNLCDTKEGRNSAVETKGCISSVVEILDTGSNEEKEHALEILVSLCSQRMDYCRLVMRQNAIHHLAYISKNGSDRGQATALELLRLLEDVEDDDSLESNLNNTSGDSNIQPQERQSSKRSAFLKKLPFLKSNR 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92122g00002 640 ProSiteProfiles U-box domain profile. 161 235 IPR003613 GO:0004842|GO:0016567
Stsc92122g00002 640 Pfam U-box domain 162 232 IPR003613 GO:0004842|GO:0016567
Stsc92122g00002 640 SUPERFAMILY RING/U-box 155 237 - -
Stsc92122g00002 640 PANTHER U BOX DOMAIN-CONTAINING 25 600 - -
Stsc92122g00002 640 MobiDBLite consensus disorder prediction 604 624 - -
Stsc92122g00002 640 SMART Ubox_2 165 228 IPR003613 GO:0004842|GO:0016567
Stsc92122g00002 640 MobiDBLite consensus disorder prediction 602 627 - -
Stsc92122g00002 640 SUPERFAMILY ARM repeat 324 595 IPR016024 -
Stsc92122g00002 640 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 235 IPR013083 -
Stsc92122g00002 640 CDD RING-Ubox_PUB 163 212 IPR045210 -
Stsc92122g00002 640 Gene3D - 309 604 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92122g00002 Stsc-Chr92122 4988 8014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92122g00002 1 609 U-box Gene Family AT4G36550 34.142 2.28e-107 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92122g00002 - - gmx:100791627 806.208