Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92122g00001 ATGTCGTTCAAAAGCATAGTACGCGAACTCAAGGAGATGAGAGATGGGATTGGTAGCTTATCGAGGCGGAGCGCAGAAAGCAAGCATTGGCACAGTCGAGTGAAGTCACATGTTGTTCCTGATGTCACTCTAAATCCGCTTGAACCTGTTCAACAGGGGCAGTGGGCACATTTACCACCTGAGTTACTTCTGGACATAATTCATAGGGTTGAAGAAAGTGAGACATCTTGGCCTGCACGCACAGTTGTTGTTTCTTGTGCTTCAGTATGTAAATCATGGAGGGCTGTTACAAAAGAGATCGTCAATACTCCTGAGCAGTGCGGAAGGCTCACGTTTCCTATTTCATTGAAACAGCCGGGTCCTCGTGATTCGCCAATACAGTGCTTTATCAGGAGAAACAGAGAAACATCGACATATTTATTGTACTTTGGTCTCGTGCCATCGGAGAATGGGACTGATAAGTTGTTATTAGCTGCTAAAAAGATAAGAAGGGCAACAGGCATAGACTTTGTGATATCTTTGGTTGCAAATGATTTCTCCCGGTCCAGCAACACATATGTTGGTAAACTAAGGTCTAATTTTTTGGGAACCAAGTTCACTGTCTACGACAGCCAATCGCCCCATGAAGCTGGAGTTCAGCCAAATGGTCGTTCTAGTAAGAGATTCCACTCTAAGCAGGTGTCTCCCAGGGTTTCAGCAGGTAACTATACTGTTGGCACCATTGCCTATGAGCTTAATGTTCTCCGCACGAGAGGGCCACGGAGAATGAACTGTACCATGAACTCCATACCTGTGGCAGCTATCCTAGAAGGAGGGACAGCCCCAACCCCAACATCTCTTCCTCAGATAATTGATGAGCAATTCCTGCTGTCGCCATCACTGAAAGGAAAAGCTCCAATAATAGACCTAAGCTCTACAAGCCTGTCAGAGCTTCCTGTGCAAAGCCAAGGCTCAGTTGAGCCTCTGGTACTTAAAAACAAGGCCCCCAGATGGCATGAGCAGCTGCAATGTTGGTGCCTAAACTTTAAGGGTCGAGTTACGGTGGCATCTGTTAAGAANNNNNNNNNNCGCAGTTGA 1077 0.4596 MSFKSIVRELKEMRDGIGSLSRRSAESKHWHSRVKSHVVPDVTLNPLEPVQQGQWAHLPPELLLDIIHRVEESETSWPARTVVVSCASVCKSWRAVTKEIVNTPEQCGRLTFPISLKQPGPRDSPIQCFIRRNRETSTYLLYFGLVPSENGTDKLLLAAKKIRRATGIDFVISLVANDFSRSSNTYVGKLRSNFLGTKFTVYDSQSPHEAGVQPNGRSSKRFHSKQVSPRVSAGNYTVGTIAYELNVLRTRGPRRMNCTMNSIPVAAILEGGTAPTPTSLPQIIDEQFLLSPSLKGKAPIIDLSSTSLSELPVQSQGSVEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKXXXXRS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92122g00001 358 Gene3D - 48 102 - -
Stsc92122g00001 358 SUPERFAMILY Tubby C-terminal domain-like 104 352 IPR025659 -
Stsc92122g00001 358 Gene3D Tubby Protein; Chain A 113 355 IPR025659 -
Stsc92122g00001 358 Pfam F-box domain 55 102 IPR001810 GO:0005515
Stsc92122g00001 358 CDD F-box_AtTLP-like 55 99 - -
Stsc92122g00001 358 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
Stsc92122g00001 358 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Stsc92122g00001 358 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Stsc92122g00001 358 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Stsc92122g00001 358 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Stsc92122g00001 358 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Stsc92122g00001 358 PANTHER TUBBY-RELATED 50 352 - -
Stsc92122g00001 358 Pfam Tub family 116 352 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92122g00001 Stsc-Chr92122 1346 4412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92122g00001 1 352 TUB Transcription Factor Family AT2G18280 61.864 3.41e-150 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Stsc92122g00001 Tub 3.1e-72 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92122g00001 K19600 - gmx:100798958 583.948