Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92093g00001 ATGTTGGACGAAGACACCAACACCAACACCACCTCCTGGGGGCCGCGCGTGTGCGACACCTGCCGCTCTGCCCCATGCGCCGTCTTCTGCCGCGCTGACTCCGCATACCTCTGCGCGGCCTGCGACGCGCGCGTGCACGCCGCCAACACACTGGCATCGCGGCACGAGCGCGTGTGGGTCTGCGAGGCCTGCGAACGCGCCCCGGCCGCCTTTCTTTGTAAGGCGGATGCAGCGTCGCTATGTTCTTCATGCGACGCTGACATCCACTCGGCTAACCCTCTGGCGAGTCGTCACCAGAGGGTGCCAATTGGACCCATGTACGGCCCACCATCCGGCCCATTAAATGGACCGGATGGTGAGTTCGTTGGGATGGTTGAAGACGAAGAAGATGAAGATGATGACGAAGAAGAAGCTGCCTCTTGGTTGTTGTTGAACAACACCAACACCACCGCCGCAGCCGCAGCCGCCACCAACCATAATAACAGTAACAGCAGCAATAACAATCAGAATCATCATCACCAACAGAGTAACAATAACGGTTTCTTGTTTGGTGGTGAGGTTGATGAGTATTTGGACCTTGTGGATTGTAATTCTTGTGGTGATGATGATAACAATCATCACAACAACAATAACATTGACCAGCAGTTTGCGGTTGATGGAGTTGAACATCATTATGGTCAGCAGCAACAGTATGGTGGTGGTCAGCGGAGCTACGGTGGTGGTGGAGGTGATAGTGTGGTGCCGGTTCAGCATTTTCAACTTGGTTTGGAGTTTGAACCTTCCAACAAAGCTGGCTACAATTACAGTGCTTCTATTAGTCAAAGTGTATCAGTTTCATCAATGGAAGTTGGTGTGGTGCCAGAATCATCAATCAGCAATGGATCAATTATGTCCCATTCAAGACCACCAAAGGGGACAATTGACCTATTTTCAGGACCTCCAATGCAGATGGCTTCGCATCTCACTCCAATGGACAGAGAAGCCAGAGTCCTAAGGTACAGAGAGAAGAAGAAGACAAGAAAGTTCGAGAAGACCATAAGGTATGCATCAAGAAAGGCCTATGCAGAGACTCGGCCTCGGATCAAAGGCCGATTCGCCAAGAGAACAGATGTAGAAGCTGAAGTTGATCAGATGTTCTCCACACCATTGATTACAGAAGTTGGTTACGGCATTGTTCCTTCATTCTGA 1188 0.5093 MLDEDTNTNTTSWGPRVCDTCRSAPCAVFCRADSAYLCAACDARVHAANTLASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHQRVPIGPMYGPPSGPLNGPDGEFVGMVEDEEDEDDDEEEAASWLLLNNTNTTAAAAAATNHNNSNSSNNNQNHHHQQSNNNGFLFGGEVDEYLDLVDCNSCGDDDNNHHNNNNIDQQFAVDGVEHHYGQQQQYGGGQRSYGGGGGDSVVPVQHFQLGLEFEPSNKAGYNYSASISQSVSVSSMEVGVVPESSISNGSIMSHSRPPKGTIDLFSGPPMQMASHLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTPLITEVGYGIVPSF 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92093g00001 395 ProSiteProfiles Zinc finger B-box type profile. 17 60 IPR000315 GO:0008270
Stsc92093g00001 395 CDD Bbox1_BBX-like 17 60 - -
Stsc92093g00001 395 Pfam CCT motif 326 368 IPR010402 GO:0005515
Stsc92093g00001 395 ProSiteProfiles CCT domain profile. 326 368 IPR010402 GO:0005515
Stsc92093g00001 395 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270
Stsc92093g00001 395 Pfam B-box zinc finger 58 103 IPR000315 GO:0008270
Stsc92093g00001 395 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 18 382 IPR045281 GO:0009909
Stsc92093g00001 395 CDD Bbox1_BBX-like 60 103 - -
Stsc92093g00001 395 MobiDBLite consensus disorder prediction 158 182 - -
Stsc92093g00001 395 SMART bboxneu5 61 103 IPR000315 GO:0008270
Stsc92093g00001 395 SMART bboxneu5 13 60 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92093g00001 Stsc-Chr92093 4017 6253 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92093g00001 1 395 C2C2-CO-like Transcription Factor Family AT3G02380 52.195 6.35e-124 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Stsc92093g00001 zf-B_box 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92093g00001 - K12135 adu:107486540 494.197