Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92086g00002 ATGTCGGAAGGTGCTGAAATCGATGAGCGTGTGGACTTTGATGATGAGAATTACATGGAAGAGATGGATGATGATGATGTTGAGGAACAATCAGATGGTGATGATGATGATGGTGATGCTGATGATAATAATAATGATAATGATAACGATAATGATGACGACGATGATGATGATGATGATGGAGTGGATGGACAGGCTGAGGAAAATGCTGAAGAACAGGAATATGAGGACTCAGGGGAGGAAGCTGGTGGGAAAGACCAAATGGGTGAAGTGAGTGGCATTGCCACTGAGTCTGAAGGAGATGGGCTGAAACCACCTTACATTGATGAAGAAGAGAAACAGAAGCATGATGAACTTCTTGCACTTCCTCCTCATGGTTCTGAAGTTTTTATTGGTGGACTTCCTCGTGATTTTTGCGAGGATGATTTGAGGGAATTGTGTGATTCGATGGGTGAAATTTTTGAGGTACGATTGATGAAAGACAGGGACAGTGGAGAAGGTAAGGGGTATGCTTTTGTGGCTTTCAAAACAAAAGAGGTTGCTCAAAATGCCATAGAAGAGATACACAATAAGAAATATAAGGGTAAAACTTTGAGGTGTTCACTATCTGAGACAAAACAAAGATTGTTCATTGGTAATGTTCCGAAAACATGGACTGAGGAGGAGTTTAGGAGAGTAGTTGAGGGTGTTGGTCCTGGAGTTGAAGTCATTGAGCTCTTTAAGGATGCTCAAAATCCTAGCAGGAACCGTGGGTTTGCCTTCGTGTCGTATTACAATAATGCATGCGCGGATTATTCACGGCAGAAAATGTCAACTGCAGGTTTTAAGCTGGAAGGCAATACCCCAACTGTCACATGGGCAGATCCAAAGAATTCACCCGATCATTCTGCTGCTTTGCAGGTTAAAGCACTTTATGTGAAGAACATACCTGAGAATACAACTACTGAACAACTGAAGGAACTATTCTCTCGTCATGGAGAAGTAACAAAAGTAGTCATGCCACCTAGCAAGGCCGGAGGGAAGCGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTAAAGGCCGTAAAAGACTCTGAGAAATACGAAGTTGATGGCCAATTGCTCGAGGTTGTTCTTGCCAAACCACAAGCTGAGAAAAAACCCGATATGGGTTACGGCTACAATCCTGGACTTCCACTTCCTGGGTATGGTGGTGCCTTTTCTGGAAATCCGTATGGCTCGGCGATAGGTGCTGCAGGAGCTGGATATGGTGTTGCTCCTAGCTTTCAACAGCCGCAGCAACCAGTGATATATGGTAGGGGTCCAATGCCGGCGGGCATGCAGATGGTTCCAATGGTATTACCGGATGGCAGAATCGGCTATGTCTTTCAACAGCCTGGTGTACAGATGCCAGTACCTCGACCACGTGGACCTGGTAGGGGCAACAGTTCAGGGGGTCCTGGAGGAAGAGGGGGAGGTAGCGGCAATGAGGGCAGTGGCAAACGCGGCCGGAGGTATCAACCGTACTAG 1521 0.4576 MSEGAEIDERVDFDDENYMEEMDDDDVEEQSDGDDDDGDADDNNNDNDNDNDDDDDDDDDGVDGQAEENAEEQEYEDSGEEAGGKDQMGEVSGIATESEGDGLKPPYIDEEEKQKHDELLALPPHGSEVFIGGLPRDFCEDDLRELCDSMGEIFEVRLMKDRDSGEGKGYAFVAFKTKEVAQNAIEEIHNKKYKGKTLRCSLSETKQRLFIGNVPKTWTEEEFRRVVEGVGPGVEVIELFKDAQNPSRNRGFAFVSYYNNACADYSRQKMSTAGFKLEGNTPTVTWADPKNSPDHSAALQVKALYVKNIPENTTTEQLKELFSRHGEVTKVVMPPSKAGGKRDFGFIHYAERSSALKAVKDSEKYEVDGQLLEVVLAKPQAEKKPDMGYGYNPGLPLPGYGGAFSGNPYGSAIGAAGAGYGVAPSFQQPQQPVIYGRGPMPAGMQMVPMVLPDGRIGYVFQQPGVQMPVPRPRGPGRGNSSGGPGGRGGGSGNEGSGKRGRRYQPY 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92086g00002 506 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 289 IPR000504 GO:0003723
Stsc92086g00002 506 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 379 IPR000504 GO:0003723
Stsc92086g00002 506 SUPERFAMILY RNA-binding domain, RBD 300 403 IPR035979 GO:0003676
Stsc92086g00002 506 SMART rrm2_1 303 375 IPR003954 GO:0003676
Stsc92086g00002 506 SMART rrm2_1 128 201 IPR003954 GO:0003676
Stsc92086g00002 506 Gene3D - 208 288 IPR012677 -
Stsc92086g00002 506 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 44 207 - -
Stsc92086g00002 506 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 14 469 - -
Stsc92086g00002 506 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 208 288 - -
Stsc92086g00002 506 CDD RRM_SF 129 201 - -
Stsc92086g00002 506 SMART rrm1_1 208 285 IPR000504 GO:0003723
Stsc92086g00002 506 SMART rrm1_1 303 375 IPR000504 GO:0003723
Stsc92086g00002 506 SMART rrm1_1 128 201 IPR000504 GO:0003723
Stsc92086g00002 506 SUPERFAMILY RNA-binding domain, RBD 124 292 IPR035979 GO:0003676
Stsc92086g00002 506 Gene3D - 104 207 IPR012677 -
Stsc92086g00002 506 Gene3D - 292 412 IPR012677 -
Stsc92086g00002 506 MobiDBLite consensus disorder prediction 1 107 - -
Stsc92086g00002 506 MobiDBLite consensus disorder prediction 8 79 - -
Stsc92086g00002 506 MobiDBLite consensus disorder prediction 464 506 - -
Stsc92086g00002 506 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 205 IPR000504 GO:0003723
Stsc92086g00002 506 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 371 IPR000504 GO:0003723
Stsc92086g00002 506 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 199 IPR000504 GO:0003723
Stsc92086g00002 506 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 272 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92086g00002 Stsc-Chr92086 5289 9050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92086g00002 129 436 Eukaryotic Initiation Factors Gene Family AT1G71770 26.286 6.32e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92086g00002 K13161 - gmx:100800974 641.343