Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92066g00002 ATGGAAGTGGTGAGCGGTTTCTCACTGCTTCTGCAGCAATTCACCGCTCTCTTACGGAAGAACCTTCTGCTTTCATGGCGAAACAAGAGGGCGACGCTGCTTCAGGTTCTCTCACCACTCTTCTTCATGTTCCTCATCTTCGCCATTGACAAGGCAATCAAAGCTCAGTACTCAAACACAACTTACTACCAGAGCCTTCCTGAGCCTCCACTTCGCCATTCCCCTTCCATCCCTCCATGCGAGGACAAATTCTTCGTCAAGCTCCCTTGCTATGATTTTGTTTGGAGTGGTGATCAAAATCCGAGAATTCGGACCATTGTTCAAGCCATCATGAACAATAACCCTGGCAGGACTATACCTCCCGCTAAGGTGAAATCCTTTAGCAATAAAGCTGCAGTGGATGAGTGGCTTCTGAATAATCCTATGCACTGTCCAGGTGCTTTGCATTTTGTGGAAAGAAGTAATAGCATCATCAGCTATGGTTTACAGACAAACTCCACAGCTGTTCAAAAGAGAGGGAAATACGAAGACCCCACTTTTGCATTTCAACTCCCACTTCAGCTTGCTGCAGAGCGAGAAATAGCTAGGAGCCTGATTGGAGACTCGAACTTCAGCTGGAATGTCTTTTTGAGGGAATTTGCACACCCAGCCATGGCAGCTTTCTCTGCAGTGGCTTCCATAGGTCCAGCATTTTTCCTAGCGATTGCCATGTTCAATTTTGTTCTTCAGATGACTTCTTTGGTGACAGAAAAAGAGCTTAAACTTCGCCAGGCAATGACTATGATGGGGCTCTATGACTCTGCTTACTGGTTGTCCTGGCTCATCTGGGAGACAGTCATTACTTTCTTGTCATCCCTTCTCGTAGTTCTCTTTGGAATGATGTTTCAGTTTCGTTTCTTCTTGAAAAACAGTTTTCTGGTCGTATTCTTTGTGTTCTTCCTATTTGAACTCAATATGACTGGCTTTGCTTTCATGCTATCTGCTTTCATTCGTAAATCGTCTTCAGCAACAACAGTAGGCTTCTTCCTATTTATTATTGGCTTTGTGACTCAGCTTGTTGTACAAGCAGGATTTCCTTATACAGATAGCATTTCGAAGACTTTCCGAACAATTTGGTCCTTCTTTCCACCCAATCCTTTTGCTCAAGCTGTACAAATTCTTTCTGAGGCGGTCTCAACTTCTGGATATCATGGTATTAGATGGAGTAAACGGGGACAATGCGGTCCTAGCGATGACAACTGCGTGATCACAATTAATGGCATTTATCATTGGTTCTTAGCTACATTCATTTTGTGGTTTGTTCTGGCCATCTACTTCGACAACATAATCCCCAATGCATCTGGTGTGAGGAAATCAGTGTTATACTTTCTAAATCCGTATTACTGGATGGGAAGAGGAGGCCAAAAAGTGAAAGAGGGCGGGGTTTGTAGTTGCTGCATAGTTTCAGTGCCTCATCAAGAGCCTGTTACACCAGATGATCAAGACGTCCTTGAAGAACAAAATACTGTAAAAAGACAACTAACAGAAGGTGTCATTGATGCAAATGTTGCTGTTCAGATACGTGGCCTTGCAAAGACATATCCTGGTGCTTGTAATATTGGTTGTTGCTGTAAATGTAAAAGAACCAAACCTTACAATGCTGTTAAGGATTTATGGGTGAACTTTGAAAAGGATCAGCTATTTTGTCTTTTAGGACCTAACGGAGCGGGTAAAACAACGGTTATTAATTGTTTGACAGGGATATCTCCAGCAACTGACGGAGATGCATTGATTTATGGACATTCCATCCGTAGCTCTGCTGGCATGTCAAAGATTCAAAAGCTTATAGGAGTATGTCCCCAGTTTGATATCTTGTGGGATTTACTGTCTGGCGAAGAGCATCTTCGACTTTTTGCTACTATCAAAGGCCTAACCCCGAGTTCCATCAACTCAATTGCCCAAGAATCACTGGCAGAGGTGAGACTTACTGATTCAGCGAGAGTGAGAGTTGGAAGTTACAGTGGAGGAATGAAACGTCGTCTGAGTGTTGCAATTTCCCTTATTGGTGACCCTAAATTGGTCATTTTGGATGAACCGACTACTGGTATGGATCCAATAACAAGGAGGCACGTATGGGACATAATTGAAAATGCTAAAAAAGGTCGTGCCATTGTCCTTACGACACACTCTATGGAAGAAGCTGACATTCTCAGTGACCGAATTGGAATCATGGCAAAGGGAAGGCTTCGCTGCATTGGCACCTCAATCAGATTGAAGTCGCGCTTTGGTACTGGTTTCATTGCTAATATTAGCTTCCATGGAAACAATGTTGAAAGTGGTACAGACAATAGGGATGATGTTTCTTCGGTACATCATGAGGCTGTGAAGCAATTCTTTAAGAATCATTTAGATGTAGTTCCAAAGGAAGAGAACAACAACTTCATAACTTTTGTGATTCCTCATGACAAGGAGGGGCTTCTGGCAGATTTTTTCGCTGAGCTACAAGATAGAGAAGAAGAATTTGGCATATCTGACATACAGCTTGGTCTGACAACTCTTGAAGAAGTTTTCCTGAATATTGCAAAGCAAGCAGAGCTAGAAAGCGCTGCAGCCGATGGGAGCCTAGTGGCTCTGACCTTAACATCCGGGGAGTCTGCACAGATTCCTATTGGAGCTAGATTTGTTGGAATTCCAGGAACAGAGTCTGAAGAGTACCCTACAGGTGTTATGGTAGAAGTATACTGGGAGCAAGACGAATCTGGTGCTCTATGTATATCTGGTCACTCACAAAAAGTTCCAGTTCCTTCTGGTGTTCAATTATCATCAACAAGACACGGTAGAAATTCGCGCCGGACAGGAACAGTTCACGGGGTTATAATCGATCCGAGCCAAGTTACTTCAGTCAGGTTTCAGTGA 2895 0.4339 MEVVSGFSLLLQQFTALLRKNLLLSWRNKRATLLQVLSPLFFMFLIFAIDKAIKAQYSNTTYYQSLPEPPLRHSPSIPPCEDKFFVKLPCYDFVWSGDQNPRIRTIVQAIMNNNPGRTIPPAKVKSFSNKAAVDEWLLNNPMHCPGALHFVERSNSIISYGLQTNSTAVQKRGKYEDPTFAFQLPLQLAAEREIARSLIGDSNFSWNVFLREFAHPAMAAFSAVASIGPAFFLAIAMFNFVLQMTSLVTEKELKLRQAMTMMGLYDSAYWLSWLIWETVITFLSSLLVVLFGMMFQFRFFLKNSFLVVFFVFFLFELNMTGFAFMLSAFIRKSSSATTVGFFLFIIGFVTQLVVQAGFPYTDSISKTFRTIWSFFPPNPFAQAVQILSEAVSTSGYHGIRWSKRGQCGPSDDNCVITINGIYHWFLATFILWFVLAIYFDNIIPNASGVRKSVLYFLNPYYWMGRGGQKVKEGGVCSCCIVSVPHQEPVTPDDQDVLEEQNTVKRQLTEGVIDANVAVQIRGLAKTYPGACNIGCCCKCKRTKPYNAVKDLWVNFEKDQLFCLLGPNGAGKTTVINCLTGISPATDGDALIYGHSIRSSAGMSKIQKLIGVCPQFDILWDLLSGEEHLRLFATIKGLTPSSINSIAQESLAEVRLTDSARVRVGSYSGGMKRRLSVAISLIGDPKLVILDEPTTGMDPITRRHVWDIIENAKKGRAIVLTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFIANISFHGNNVESGTDNRDDVSSVHHEAVKQFFKNHLDVVPKEENNNFITFVIPHDKEGLLADFFAELQDREEEFGISDIQLGLTTLEEVFLNIAKQAELESAAADGSLVALTLTSGESAQIPIGARFVGIPGTESEEYPTGVMVEVYWEQDESGALCISGHSQKVPVPSGVQLSSTRHGRNSRRTGTVHGVIIDPSQVTSVRFQ 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92066g00002 964 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 540 746 IPR027417 -
Stsc92066g00002 964 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 518 764 IPR003439 GO:0005524
Stsc92066g00002 964 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 484 860 IPR026082 GO:0016020|GO:0055085|GO:0140359
Stsc92066g00002 964 MobiDBLite consensus disorder prediction 928 949 - -
Stsc92066g00002 964 ProSitePatterns ABC transporters family signature. 666 680 IPR017871 GO:0005524|GO:0016887
Stsc92066g00002 964 Pfam ABC-2 family transporter protein 31 438 IPR013525 GO:0016020|GO:0140359
Stsc92066g00002 964 Gene3D - 509 779 IPR027417 -
Stsc92066g00002 964 Pfam ABC transporter 549 693 IPR003439 GO:0005524
Stsc92066g00002 964 SMART AAA_5 557 741 IPR003593 GO:0016887
Stsc92066g00002 964 CDD ABC_subfamily_A 518 752 - -
Stsc92066g00002 964 FunFam ABC transporter A family member 2 508 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92066g00002 Stsc-Chr92066 5959 12682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92066g00002 496 763 Calmodulin-binding Proteins AT2G36910 19.708 2.15e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92066g00002 - - gmx:100786538 1539.63