Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92056g00002 ATTACCGGAGACAGATTTATTGGTCGAGGTATCACTTTTAAGAACACTGCAGGTGCAATAAACCATCAAGCTGTTGCACTGCGTTCTGGATCAGATTTATCAGTTTTTTATCAATGCAGTTTCGAAGGTTATCAAGACACATTATATGTTCATGCTGCGAAACAATTCTACAGAGAATGTGATATATATGGAACAGTTGATTTTATCTTTGGTGATGCTACTGCCGTATTCCAAAACTGCAACATCTCTCATTGGAAGGAATACTCAAGAACTGTGTTCATGAAGAGTTTTCTTGATAGCTTGATTGATCCAGCAGGGTGGTTGGAATGGAATAAAAGCAGCTTCGCATTAAGCACATTATATTATGGAGAGTATATGAACAAAGGACCTGGATCTTCAACTGCAAACAGAGTTAAATCAAGTGGTTATCATGTCATTACCAATGAGACTGAAGCTTCACAATTCAGTGTTGGAAATTTTATTGCTGGCTGCCATCCACCCATGTGCCTTTCAACATTAGTATTTAGATATTTTTTCATATGA 543 0.372 ITGDRFIGRGITFKNTAGAINHQAVALRSGSDLSVFYQCSFEGYQDTLYVHAAKQFYRECDIYGTVDFIFGDATAVFQNCNISHWKEYSRTVFMKSFLDSLIDPAGWLEWNKSSFALSTLYYGEYMNKGPGSSTANRVKSSGYHVITNETEASQFSVGNFIAGCHPPMCLSTLVFRYFFI 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92056g00002 180 PANTHER PECTINESTERASE 2 82 - -
Stsc92056g00002 180 Pfam Pectinesterase 85 163 IPR000070 GO:0030599|GO:0042545
Stsc92056g00002 180 Pfam Pectinesterase 2 83 IPR000070 GO:0030599|GO:0042545
Stsc92056g00002 180 Gene3D - 1 83 IPR012334 -
Stsc92056g00002 180 Gene3D - 84 167 IPR012334 -
Stsc92056g00002 180 SUPERFAMILY Pectin lyase-like 1 163 IPR011050 -
Stsc92056g00002 180 ProSitePatterns Pectinesterase signature 2. 62 71 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92056g00002 Stsc-Chr92056 12136 12680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92056g00002 3 163 Carbohydrate Esterase AT2G45220 53.302 2.42e-71 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92056g00002 K01051 - ini:109183504 251.521