LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc92046g00001	ATGGAACTTTCATCATCATCATTTCAAACAGAATTTCCATCATCATCATTACCAGCAGCACCACCACAAGCAAGGGAGAGGATTCATGAAATAGGGCCACCACCATTCTTAACCAAAACCTTTGATGTGGTGGATGATCCAACAACCAACCATGTTGTTTCTTGGAGCAGAGGAGGTAGCAGCTTTGTTGTTTGGGATCTACACACCTTCTCCAAAACCCTTCTCCCCAAATACTTCAAGCACAACAACTTCTCAAGCTTTGTAAGGCAACTCAATACTTATGGCTTTAGGAAAATTGATCCAGAAAAATGGGAATTTGCAAATGAAGGATTCATCAAAGGTCACAAGCATCTCTTGAAGACCATAAGGAGTAGGAAACCACCTTCCCACCAACCAATTCCTTCCCAACAAGGCCATGATTATGGCGATCACTCGCTCGAGCTCGGCCAATTCGGCCTATACAGAGAGATCGACCGGTTGCGGCGCGACAAGAGGGTTCTAATGATGGAGCTTTTGAGCCTTAGAGAGCAACAAGACAACACAAAGTTGTACATTCAAGAAATGGAGCAAAGGTTACAAGGGACAGAAGTTAAGCAAAAACAAATGATGGCATTCTTAGCAAGAGCAATGAAAAACCCTTCATTTATTCAACAATTATTAGTCCAACATAAAGAGAATAATAAAACTAATGTACTTGAATTAGATGATGAAATTATGAATAATAATAAGAGGGTAAGGTCAATTGAGCAAGGAGAATCAAGCAATATTAGTACTAGTAGTGTTAAAGTAGTTGAGCCTTTAGAATTTGGTGTTTCAGAGTTGGAAGTGTTGGCTATGGAAATGCAAGGTTTTGGTAGAGGGAATAGGGGAAATTTGGAACATGAAGAGAGGCTTGAAAGGGAAATTGATGAAGGGTTTTGGGAAGAGCTTTTGTTTAATGAGAAATTTGAAGGAAAATGA	960	0.3979	MELSSSSFQTEFPSSSLPAAPPQARERIHEIGPPPFLTKTFDVVDDPTTNHVVSWSRGGSSFVVWDLHTFSKTLLPKYFKHNNFSSFVRQLNTYGFRKIDPEKWEFANEGFIKGHKHLLKTIRSRKPPSHQPIPSQQGHDYGDHSLELGQFGLYREIDRLRRDKRVLMMELLSLREQQDNTKLYIQEMEQRLQGTEVKQKQMMAFLARAMKNPSFIQQLLVQHKENNKTNVLELDDEIMNNNKRVRSIEQGESSNISTSSVKVVEPLEFGVSELEVLAMEMQGFGRGNRGNLEHEERLEREIDEGFWEELLFNEKFEGK	319

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc92046g00001	319	Gene3D	-	29	126	IPR036388	-
	Stsc92046g00001	319	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	26	252	IPR027725	-
	Stsc92046g00001	319	SMART	hsfneu3	32	125	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc92046g00001	319	MobiDBLite	consensus disorder prediction	1	17	-	-
	Stsc92046g00001	319	Pfam	HSF-type DNA-binding	36	124	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc92046g00001	319	PRINTS	Heat shock factor (HSF) domain signature	87	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc92046g00001	319	PRINTS	Heat shock factor (HSF) domain signature	74	86	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc92046g00001	319	PRINTS	Heat shock factor (HSF) domain signature	36	59	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc92046g00001	319	FunFam	Heat shock transcription factor 1	29	126	-	-
	Stsc92046g00001	319	Coils	Coil	157	177	-	-
	Stsc92046g00001	319	ProSitePatterns	HSF-type DNA-binding domain signature.	75	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc92046g00001	319	MobiDBLite	consensus disorder prediction	1	25	-	-
	Stsc92046g00001	319	SUPERFAMILY	"Winged helix" DNA-binding domain	32	124	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc92046g00001	Stsc-Chr92046	8176	9748	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc92046g00001	26	316	HSF	AT3G51910	51.351	3.74e-96	284

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Stsc92046g00001		HSF_DNA-bind	1.1e-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc92046g00001	K09419		-	gmx:100794264	369.777