Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92042g00001 ATGAACGTTCTTCGGGTGACATTACGTGAGTCGAAGCGTCATGAGGGGGCCTACGGGGCTAACGACCCGGCTTACGACAATATCAGGCTATCGGACGTAGTGGATGACTTGGGGGTCTTCGGACTAACGTCCCGATTCACAGGGCGTTATATACGCAATATAAAGGAGAGAAACCCCCAAGTATATATGATTAAGAGAAGGGAAGAGAAAGACCGTAAACGGTTGGGGCATCGAGCGAGTTGTCCTCCGGGAAGTGCGTCCGATAGTGGTCCGGGACTAGTACTGGACCGGTCGGGTTTGGCTAAAGTAACCGACCGGATGGGTCGTGTTAAACTTGAGATAAAGAGAATAGATAACACGACGAATCGACATGTTACTTTCTCAAAGCGTAGAAATGGCCTCATTAAAAAGGCTTATGAGTTGTCCATCTTATGTGACATTGATATTGCTCTTATAATGTTCTCTCCATCTGGTCATGTTAGCCACTTTTCTGGTAGAAAAAG 503 0.4692 MNVLRVTLRESKRHEGAYGANDPAYDNIRLSDVVDDLGVFGLTSRFTGRYIRNIKERNPQVYMIKRREEKDRKRLGHRASCPPGSASDSGPGLVLDRSGLAKVTDRMGRVKLEIKRIDNTTNRHVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGHVSHFSGRK 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92042g00001 167 ProSitePatterns MADS-box domain signature. 109 163 IPR002100 GO:0003677|GO:0046983
Stsc92042g00001 167 ProSiteProfiles MADS-box domain profile. 107 167 IPR002100 GO:0003677|GO:0046983
Stsc92042g00001 167 Gene3D - 119 167 IPR036879 GO:0003677|GO:0046983
Stsc92042g00001 167 SUPERFAMILY SRF-like 107 164 IPR036879 GO:0003677|GO:0046983
Stsc92042g00001 167 PANTHER SERUM RESPONSE FACTOR HOMOLOG 109 164 - -
Stsc92042g00001 167 SMART madsneu2 107 166 IPR002100 GO:0003677|GO:0046983
Stsc92042g00001 167 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 116 163 IPR002100 GO:0003677|GO:0046983
Stsc92042g00001 167 PRINTS MADS domain signature 129 144 IPR002100 GO:0003677|GO:0046983
Stsc92042g00001 167 PRINTS MADS domain signature 144 165 IPR002100 GO:0003677|GO:0046983
Stsc92042g00001 167 PRINTS MADS domain signature 109 129 IPR002100 GO:0003677|GO:0046983
Stsc92042g00001 167 MobiDBLite consensus disorder prediction 69 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92042g00001 Stsc-Chr92042 1500 3589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92042g00001 107 166 Type I MADS-box Gene Family AT1G22130 88.333 1.08e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc92042g00001 SRF-TF 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92042g00001 - - rcu:8263023 115.931