Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92037g00004 ATGACACCAAAACCGATCACACCTCCTCTCTGTTTCCTCCTCCTCCTCCTCTTCAGGGTGGCCTCCGCCGTGCCAAGTTTCTTGAACTACAGCTGCGTCACCGCCAACGACGAAGCCTCCACCACCTACCTCAACAACCTCAACATCCTCTTAACGAACCTCACTTCCAACACTCAAATCGACTACGGCTTCTACACTTCCTCCTTCGGCGAAAACACTGACACAGCATACGCTATTGGCATGTGCAGAGGAGACGTTAAACTCAATGATTGCCGAAGCTGCCTCAACGATTCAAGACTCCTCCTCACACAGATATGTCCTAACCACCAAGCCGTTGGCTGGTACGAATACTGCATGCTTCGCTACTCCAACCGCTCCATACTCGGAACCGTTGAGAATTTTCCACAATTCCCTATGTGGAATCCGTACTTCATTTCTTCCAAAGAGTTCAATCAGTTCAACAAATCATTGAAGACCTTGATGGACAAGCTCAGAATCGAAGCTTCTAGAGGTGACTATCGTCGTAAGTATGCCTCCGAAAACGTGACTTCTGGAATTCAAAGTTTCAAGTACATATTTGGCCTTGCACAGTGCACTCCGGATTTGTCTCGACAACAGTGCGACGATTGCTTGTCTGGGGCATTTTCGGAAATTCCAAGTTGTTGTAATGGTAGGAGAGGTGCCAGGGTTATCAAACCCAGTTGTAACGTTAGATATGAAATCTACCCTTTCTTGACGTCTACCATTGATGCACTCTCACCTTCAAGCTCTCCAGGAAAAGGCAGCAATACAACACGAACCATAGTCACCATAGTTGCTGTTGTTGCTGCTGTTATTTTGGTGCTCAGTTCCATATACGTCTGTTTAAGACTGAGGATGTCAAGAAAGAATTTTCAAAATGAAGAATCTGATGAAGAAATTGTAGCTGATCAATCATTACAGTTCACCTTTGATACCATACGAGTTGCTACAGAGGATTTCTCATATTCTAATAAACTAGGAGAAGGTGGATTTGGAGCTGTTTATAAGGGTACGCTCTCCAATGGACAAATGATTGCTGTGAAGAGGTTATCTAAGGACTCAGGCCAAGGAGATATGGAATTCAGGAATGAAGTGCAGTTATTAGCTGATCTTCAACACGAAAATTTAGTTAAGCTACTGGGTTTTTGTTTGAAAGGAAGCGAAAGGTTACTTATCTATGAATTTGTTCCTAATAAAAGCCTTGATTACTTCCTATTTGATCCAACCAAGCGAGGACAATTGGATTGGATAAAGAGATTCAAAATCATTGAAGGTGTTGCACGAGCGTTACTTTATCTTCATGAGGATTGTAGAACACGTATTATACACCGAGACCTCAAACCAAGCAACATTCTCTTAGATGAAGAGATGAATGCTAGGTTATCAGATTTTGGATTGGCACGATTATTTATTGTGGATCAGAATCAAGGAAAGACAAGTAAAATTGTTGGCACATAG 1479 0.4273 MTPKPITPPLCFLLLLLFRVASAVPSFLNYSCVTANDEASTTYLNNLNILLTNLTSNTQIDYGFYTSSFGENTDTAYAIGMCRGDVKLNDCRSCLNDSRLLLTQICPNHQAVGWYEYCMLRYSNRSILGTVENFPQFPMWNPYFISSKEFNQFNKSLKTLMDKLRIEASRGDYRRKYASENVTSGIQSFKYIFGLAQCTPDLSRQQCDDCLSGAFSEIPSCCNGRRGARVIKPSCNVRYEIYPFLTSTIDALSPSSSPGKGSNTTRTIVTIVAVVAAVILVLSSIYVCLRLRMSRKNFQNEESDEEIVADQSLQFTFDTIRVATEDFSYSNKLGEGGFGAVYKGTLSNGQMIAVKRLSKDSGQGDMEFRNEVQLLADLQHENLVKLLGFCLKGSERLLIYEFVPNKSLDYFLFDPTKRGQLDWIKRFKIIEGVARALLYLHEDCRTRIIHRDLKPSNILLDEEMNARLSDFGLARLFIVDQNQGKTSKIVGT 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92037g00004 492 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 30 492 - -
Stsc92037g00004 492 Gene3D - 139 244 IPR038408 -
Stsc92037g00004 492 Gene3D - 24 126 IPR038408 -
Stsc92037g00004 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Stsc92037g00004 492 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 403 492 - -
Stsc92037g00004 492 FunFam Cysteine-rich receptor-like protein kinase 10 135 244 - -
Stsc92037g00004 492 Gene3D Transferase(Phosphotransferase) domain 1 403 492 - -
Stsc92037g00004 492 SUPERFAMILY Protein kinase-like (PK-like) 307 492 IPR011009 -
Stsc92037g00004 492 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Stsc92037g00004 492 ProSiteProfiles Gnk2-homologous domain profile. 25 127 IPR002902 -
Stsc92037g00004 492 ProSiteProfiles Gnk2-homologous domain profile. 133 244 IPR002902 -
Stsc92037g00004 492 Pfam Protein kinase domain 329 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc92037g00004 492 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 25 127 - -
Stsc92037g00004 492 Pfam Salt stress response/antifungal 36 124 IPR002902 -
Stsc92037g00004 492 Pfam Salt stress response/antifungal 149 241 IPR002902 -
Stsc92037g00004 492 Gene3D Phosphorylase Kinase; domain 1 288 402 - -
Stsc92037g00004 492 SMART serkin_6 327 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc92037g00004 492 ProSiteProfiles Protein kinase domain profile. 327 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc92037g00004 492 FunFam Cysteine-rich receptor-like protein kinase 10 291 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92037g00004 Stsc-Chr92037 12161 14135 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92037g00004 13 492 Receptor kinase-like Gene Family AT4G05200 43.825 9.17e-138 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc92037g00004 Pkinase 1.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92037g00004 - - cave:132170294 547.354