Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92031g00002 AACGAGTCAACTCGCTGGGCGAAAGAAATGAACTCGGATATAACACACGCCACCACGGCGTCGTATTGGTGTTACAGCTGTACACGTTTCGTACACCTTCTCGACCGACACGACGTCGTTTGCCCCCACTGCCAAAGCGGTTTCGTTGAACAGATCCATGCCGGTCACTCCCCAGCCATGTCTCTCTTCGCCGACGGTCTTCAAGCTTCTCGCCGCCAAGGCTTCCGCCGGAGACGCCGAAACGCCGGCAGCCGCTCGCCGTTTAACCCGGTAATCGTTCTCCGCGGAGCAGGGGAGGATGGCGCTGCCGGAGGGGATAACGAGGGTTCCACTTTCGAGTTGTACTACGACGACGGCGACGGTTCTGGTCTCCGTCCTCTGCCGCCAACGATGTCGGAGTTCTTGCTCGGATCTGGATTTGATAGGTTACTAGAGCAGTTTTCTCAGATCGAGATCAACGGATTTGGACGGCCGGAGAATCCGCCGGCTTCGAAGGCGGCGATAGAGTCAATGCCGACGGTTGAGATTGGAGGCTCTCACGTGGACACGGAAACTTACTGCGCCGTGTGCAAGGAAGCTTTCGAGCTCGGTGCGGAGGCGCGTGAGATGCCGTGCAAACACCTTTACCACTCCGATTGCATCCTGCCGTGGCTCACGATGCGAAACTCGTGTCCTGTGTGCCGCCACGAGCTGCCGTCCGATCAGAACTCGGCGGAAGGGAGAGTCGCCGGTCAGATCGACGAGGAAGCGGTAGGGTTGACCATATGGAGGTTGCCGGGAGGCGGTTTCGCCGTCGGGAGATTCTCCGGCGGCCGAAGATCCGGCGAAAACCGTTTGCCCGTTGTGTACACCGAGATGGACGGTGGAGGCAGCGGTGGAAGCAATGGTGGAAACTCAAACGGTAGTTCTAGGAGAATATCTCGCGCAGTTGGAAGCAGTAGGGTTAGGGAGAATCGCGGAATTGGAAGAATTTTCCGGAATTTCTTTTCATTCTTCGGGAGAATTGGATCTAGGTCACGTTCCTCTTCGTCTTCGTCATCGTCGTATTCAGGTTCTGAGCATGGATCAGTTAGTAGAAGTCACAGCTATTCGAGTTCGTTTTTCAATAGAAACTCAGGGAGGAGAAGAACTTGGGTCTTGGATGATTGA 1149 0.5579 NESTRWAKEMNSDITHATTASYWCYSCTRFVHLLDRHDVVCPHCQSGFVEQIHAGHSPAMSLFADGLQASRRQGFRRRRRNAGSRSPFNPVIVLRGAGEDGAAGGDNEGSTFELYYDDGDGSGLRPLPPTMSEFLLGSGFDRLLEQFSQIEINGFGRPENPPASKAAIESMPTVEIGGSHVDTETYCAVCKEAFELGAEAREMPCKHLYHSDCILPWLTMRNSCPVCRHELPSDQNSAEGRVAGQIDEEAVGLTIWRLPGGGFAVGRFSGGRRSGENRLPVVYTEMDGGGSGGSNGGNSNGSSRRISRAVGSSRVRENRGIGRIFRNFFSFFGRIGSRSRSSSSSSSSYSGSEHGSVSRSHSYSSSFFNRNSGRRRTWVLDD 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92031g00002 382 MobiDBLite consensus disorder prediction 282 313 - -
Stsc92031g00002 382 CDD RING-H2_RNF126-like 187 228 - -
Stsc92031g00002 382 Pfam Protein of unknown function (DUF1117) 251 370 IPR010543 -
Stsc92031g00002 382 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
Stsc92031g00002 382 Pfam Ring finger domain 186 228 IPR001841 -
Stsc92031g00002 382 Pfam zinc-ribbon 21 52 IPR039525 GO:0061630
Stsc92031g00002 382 MobiDBLite consensus disorder prediction 291 309 - -
Stsc92031g00002 382 SMART ring_2 187 227 IPR001841 -
Stsc92031g00002 382 FunFam E3 ubiquitin-protein ligase RING1-like 149 234 - -
Stsc92031g00002 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 51 232 - -
Stsc92031g00002 382 MobiDBLite consensus disorder prediction 336 366 - -
Stsc92031g00002 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 234 IPR013083 -
Stsc92031g00002 382 SUPERFAMILY RING/U-box 167 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92031g00002 Stsc-Chr92031 11131 12279 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92031g00002 126 239 C3H Transcription Factor Family AT5G01980 43.860 2.99e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92031g00002 K11982 - gmx:100792874 417.927