Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92012g00002 ATGTTGCAGCTTTCTATTCAACGAGTGAAGAAGTTGAACATTTTGAGGCCTCAGATCTTTGCTTTGGGAAGTTCATATATGTCAACGGTTGCTCAGCCATCTGCCAGTAAGCGCAATCCCCAGAGGGTTCCAAATCTTATTGGTGGCAGTTTTGTTGACTCAAAAGCATCATCTTTCATTGATGTCATAAACCCAGCAACCCAAGAAGTTGTTTCAAAACTTCCTTTGACTACAAATGAAGAGTTTAAAGCTGCTGTATCTGCAGCAAAGAAAGCATTTCCATCATGGCGTAACACTCCTATTACGACACGCCAGCGTGTTATGCTGAAGCTTCAGGAGCTTATACGCAGAGATATGGATAAACTTGCACTGAGTGTGACCACTGAACAAGGAAAGACATTAAAGGATGCACAAGGAGATGTATTTCGTGGTTTAGAGGTTGTCGAACATGCTTGTGGGATGGCAACTCTACAAATGGGGGAGTATGTTTCAAATGTAGCACATGGAATTGATACTTACAGCATTAGAGAACCACTTGGTGTCTGTGCTGGTATTTGTCCTTTCAACTTTCCTGCAATGATTCCCTTGTGGATGTTCCCAATTGCTGTTACCTGTGGTAATACCTATGTTCTAAAGCCATCAGAGAAAGATCCAGGTGCTTCTATAATGCTAGCTGAATTGGCATTGGAGGCTGGTCTGCCGGAAGGTGTCTTAAATATTGTCCATGGAACTCATGATATTGTGAATGCTATTTGTGATGATGACGACATCAAAGCCATATCCTTTGTTGGTTCAAATGTTGCTGGAATGCACATATATTCAAGAGCAGCAGCTAAAGGGAAACGTGTTCAATCTAATATGGGGGCCAAGAATCACGCCATTGTCTTGCCAGATTCAAATGTTGATGCTACTTTAAATGCTTTAGTCGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCTCTCAGCACAGTTATTTTTGTTGGAGGCTCAAAACCTTGGGAAGCTAAACTTGTTGAGCGTGCCAAAGCCCTAAAAGTAAACGCTGGAACTGAACCCGATACTGACCTCGGTCCAGTCATCAGCAAACAGGCAAAGGAACGGATACACAGATTAGTGCAATCGGGGGTTGACAGTGGTGCCAGACTATTGCTTGATGGAAGAAATATAGTGGTCCCAGGGTATGAATCTGGAAATTTTGTTGGCCCAACCCTCCTATCAGATGTCAATGCCAACATGGAGTGCTACCAGGAGGAAATTTTCGGCCCAGTTCTTCTTGTGATGGAGGCTGAGAGCTTGGACGATGCCATAAACATTGTCAACCAAAACAAGTATGGTAATGGTGCTTCGATATTTACTACCTCGGGTGTTGCTGCAAGGAAATTTCAGACTGAGATTGAGGCTGGACAGGTTGGCATCAATGTCCCTATTCCAGTTCCGCTACCCTTTTTCTCATTTACTGGAAACAAGGCTTCATTTGCAGGGGATCTCAATTTCTATGGCAAGGCAGGAGTTAACTTTTATACACAGATCAAAACAATAACTCAGCAATGGAAGGATTCTGCAGCTGGTGGTGGCAAGGCTAACTTGGCAATGCCAACCTCTCAAAAATCTTGA 1620 0.4358 MLQLSIQRVKKLNILRPQIFALGSSYMSTVAQPSASKRNPQRVPNLIGGSFVDSKASSFIDVINPATQEVVSKLPLTTNEEFKAAVSAAKKAFPSWRNTPITTRQRVMLKLQELIRRDMDKLALSVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSNVAHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTYVLKPSEKDPGASIMLAELALEAGLPEGVLNIVHGTHDIVNAICDDDDIKAISFVGSNVAGMHIYSRAAAKGKRVQSNMGAKNHAIVLPDSNVDATLNALVAAGFGAAGQRCMALSTVIFVGGSKPWEAKLVERAKALKVNAGTEPDTDLGPVISKQAKERIHRLVQSGVDSGARLLLDGRNIVVPGYESGNFVGPTLLSDVNANMECYQEEIFGPVLLVMEAESLDDAINIVNQNKYGNGASIFTTSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQIKTITQQWKDSAAGGGKANLAMPTSQKS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92012g00002 539 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 313 324 IPR016160 GO:0016491
Stsc92012g00002 539 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 9 536 IPR010061 GO:0004491
Stsc92012g00002 539 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 47 294 - -
Stsc92012g00002 539 SUPERFAMILY ALDH-like 39 520 IPR016161 GO:0016491
Stsc92012g00002 539 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 45 519 IPR010061 GO:0004491
Stsc92012g00002 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 62 496 IPR016162 GO:0016491
Stsc92012g00002 539 Pfam Aldehyde dehydrogenase family 51 515 IPR015590 GO:0016491
Stsc92012g00002 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 288 488 IPR016163 GO:0016620
Stsc92012g00002 539 CDD ALDH_F6_MMSDH 43 519 IPR010061 GO:0004491
Stsc92012g00002 539 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 288 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92012g00002 Stsc-Chr92012 8032 15327 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92012g00002 12 503 Aldehyde Dehydrogenase Gene Family AT2G14170 80.894 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92012g00002 K00140 - gmx:100811544 968.378