Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92008g00001 ATGCGGCAGGTCAAACTAGCCCCGTATCCGAATCGTCTCGGTGAGCCTGATTGCTTATATTTTCTGAGGACTGGAATGTGTGGTTATGGGACTAACTGCCGCTACAACCATCCTGCTCATGTTTCACTGGGTACTCATTATGGGGAAGAGCTCCCTGAGAGGAATGGGCAACCTGATTTTGAATATTTTCTTAAGACAGGGACATGCAAGTATGGGTCATCATGTAAATATGATCATCCAAGAGACAGGCGAGGTGCTGCTCCTGTGTTATTAAATGCTTTAGGCCTTCCAATGCGTCATGAAGAAAAATCATGTTCCTATTACATGAGAACTGGTTCATGTAAGTTTGGAGTAGCCTGCAAGTTTCACCATCCCCCACATGCTTCTTTTGGAGCTTCTGGAGTAGCTGGATCTCCCACCTCAATTATTCCCGCATCTGGATATGTTGGTGGATATCCATATTCCTTACCGAGAATGCCATATTTATCTGGGCAGGCCTTCAGTCTTATGTACCTCCTTTCTTTTCTTCTTGACAAGGCATTATACCTGGGCAGAGCTGGAACAGCTACATGTGATGGTAACTGGTATGCTTTCTCAGCATAA 603 0.4494 MRQVKLAPYPNRLGEPDCLYFLRTGMCGYGTNCRYNHPAHVSLGTHYGEELPERNGQPDFEYFLKTGTCKYGSSCKYDHPRDRRGAAPVLLNALGLPMRHEEKSCSYYMRTGSCKFGVACKFHHPPHASFGASGVAGSPTSIIPASGYVGGYPYSLPRMPYLSGQAFSLMYLLSFLLDKALYLGRAGTATCDGNWYAFSA 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92008g00001 200 Gene3D - 11 85 - -
Stsc92008g00001 200 SUPERFAMILY CCCH zinc finger 17 39 IPR036855 GO:0046872
Stsc92008g00001 200 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Stsc92008g00001 200 ProSiteProfiles Zinc finger C3H1-type profile. 54 82 IPR000571 GO:0046872
Stsc92008g00001 200 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 62 81 IPR000571 GO:0046872
Stsc92008g00001 200 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 38 IPR000571 GO:0046872
Stsc92008g00001 200 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 104 126 IPR000571 GO:0046872
Stsc92008g00001 200 SUPERFAMILY CCCH zinc finger 62 83 IPR036855 GO:0046872
Stsc92008g00001 200 PANTHER PROTEIN PHOSPHATASE RELATED 6 162 - -
Stsc92008g00001 200 SUPERFAMILY CCCH zinc finger 97 126 IPR036855 GO:0046872
Stsc92008g00001 200 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Stsc92008g00001 200 SMART c3hfinal6 12 39 IPR000571 GO:0046872
Stsc92008g00001 200 SMART c3hfinal6 54 81 IPR000571 GO:0046872
Stsc92008g00001 200 SMART c3hfinal6 101 126 IPR000571 GO:0046872
Stsc92008g00001 200 Gene3D - 86 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92008g00001 Stsc-Chr92008 5170 6445 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92008g00001 15 80 C3H Transcription Factor Family AT1G04990 38.667 1.58e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc92008g00001 zf-CCCH 4.5e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92008g00001 - - gmx:100812856 273.863