Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91g00009 ATGAACATGTTAGGCCTGAGAGACCTAGTGTTCATAGCACCAACCCATTCACTTCACCATCATCACCACCACCACCAGCAGCAAGGCCAAACCATAATCTCACAAGACCAACACAACACCCATGGCGGCCATACCAACAACAATAACAACACCGACAATAATAACATTCCTTTGCCTCCATCGTCACTCAGCGTTGGCCTTGGAATCTTCCCTCTCTTAACCGCCACACCCTGCATGCCACCACAAGATGACAACAACAACAATGTTCATCACCATGACCAACAAGAACACGTTCTTGTTAACACCACTGCCAACAATAGCAGTTACTGGAACCTCAAGATGTGTCCTGAAGTTTCAGAACACGACGGCGGCGGCGGTGGCGGCGATGAAAACAACAATGGAGGAGGTGGTGGTGGTCTGTATGGGCCTGAATTCAGGGTGTGCCAGGATTGTGGAAACAGGGCAAAGAAAGATTGCAGTTACAAGAGGTGCAGGACTTGTTGCAAGGGGCGTGGATATGATTGCAGCACTCACGTGAAGAGCACGTGGGTCCCCGTGTCGCATCGCCGGGCCCGCGATATCGCCGTTGTTGCTGCTTCTGCCGGTGGTGGTGACGGTGTTGGTGGGAGTAATAATAATAAGAGGCTTAAAGGTTTTGGATCATCACAAACAACAACTACTACTAATACCTCTCATAGTTCAACCTCTAATGCTACCACAACTAAGAGTTTGGATTCCACCTCTTGTCACCAAGATGCTGAATTCAAACAGTCTTTACCGGGGCAAGTTCGCGCGCCGGCGGCGTTTAAGTGCCACAGAGTGTCTGCTATTGGCAATGGGGAAGATGAAATCACATACTTGGCCACTGTCCAGATCTGTGGACATGTGTTCAAAGGGTTTCTTTATGATCAAGGTGCTGATGGCAAGAACGAAGTTCCATGTGTTTCAGTGCTGCAACTTGGAAACAGTGGAAGTGGGAAGAAGAACAACAACAACAATGGGGAATGCTCCTCTCCAACTCCAATTGGAGTTCCAATCACTGCCTACCCTGCTTCTGCTTGCTGA 1065 0.4901 MNMLGLRDLVFIAPTHSLHHHHHHHQQQGQTIISQDQHNTHGGHTNNNNNTDNNNIPLPPSSLSVGLGIFPLLTATPCMPPQDDNNNNVHHHDQQEHVLVNTTANNSSYWNLKMCPEVSEHDGGGGGGDENNNGGGGGGLYGPEFRVCQDCGNRAKKDCSYKRCRTCCKGRGYDCSTHVKSTWVPVSHRRARDIAVVAASAGGGDGVGGSNNNKRLKGFGSSQTTTTTNTSHSSTSNATTTKSLDSTSCHQDAEFKQSLPGQVRAPAAFKCHRVSAIGNGEDEITYLATVQICGHVFKGFLYDQGADGKNEVPCVSVLQLGNSGSGKKNNNNNGECSSPTPIGVPITAYPASAC 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91g00009 354 NCBIfam putative zinc finger domain, LRP1 type 147 189 IPR006510 -
Stsc91g00009 354 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 23 334 IPR007818 GO:0003700|GO:0006355
Stsc91g00009 354 NCBIfam LRP1 C-terminal domain 259 305 IPR006511 -
Stsc91g00009 354 MobiDBLite consensus disorder prediction 214 243 - -
Stsc91g00009 354 Pfam Domain of unknown function (DUF702) 147 307 - -
Stsc91g00009 354 MobiDBLite consensus disorder prediction 17 60 - -
Stsc91g00009 354 MobiDBLite consensus disorder prediction 28 60 - -
Stsc91g00009 354 MobiDBLite consensus disorder prediction 201 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91g00009 Stsc-Chr91 74370 82347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91g00009 1 349 C2H2 Transcription Factor Family AT5G12330 36.571 8.89e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Stsc91g00009 DUF702 2.8e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91g00009 - - adu:107462849 474.167