Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91981g00001 ATGGCAACTCCATTACCGTTTATGTTACTTCTACTATTTCTTGCACCTTCCATAATTTCTTCATCCCCTGTTCAAGACCCTGAATTAGTAGTAGAAGAAGTACACAGCATTATGAATGCCTCAAGAAGGAACTTGGGGTTTCTTTCTTGTGGGAGTGGCAACCCCATTGACGATTGTTGGAGGTGTGATTCGAATTGGGAGAAGAACCGGAAGCGTCTCGCCGACTGCGCCATTGGCTTCGGCAAGCACGCCATTGGAGGAAGAGACGGCAAAATCTACGTGGTGACAGACACCGGCGACGACCCGGTTAGCCCAAAGCCAGGGACACTAAGGTATGGTGTTATTCAAGAAGAGCCATTGTGGATCATCTTCAAACGTGACATGGTAATTAAGCTAAAAGAAGAGCTAATGATGAATTCTTTCAAGACAATTGATGGAAGAGGAGCTAGTGTTCACATTGCTGGAGGACCTTGCATCACAATTCAGTATGTAACAAACATTATAATCCATGGAATTAACATCCATGATTGTAAGCAAGGTGGGAATGCTTATGTTAGGGACTCTCCTTCACATTATGGTTGGAGGACTCTGTCCGATGGCGACGGCGTCTCGATCTTCGGCGGGAGCCATGTTTGGGTGGACCATTGCTCGCTGTCGAATTGCCGCGACGGATTAGTCGACGCCATTCGGGGATCGACGGCCATTACCATCTCCAATAACTACATGACTCACCATAACAAGGTTATGCTTTTGGGACATAGTGATACTTATACTCAAGATAAGAATATGCAAGTTACTATTGCTTTTAACCATTTTGGAGAAGGCTTAGTTCAGAGGATGCCAAGATGTAGGCATGGATACTTCCATGTTGTGAACAATGACTATACTCATTGGAAAATGTATGCCATTGGAGGAAGTGCTGCACCAACTATCAACAGCCAAGGCAATAGATTTCTTGCTCCCAATGACAATACCTTTAAAGAGGTGACAAAGCGTGAGGACACACCAAAAAGTAAATGGAAGAATTGGAATTGGAGATCTAATGGAGATTTGATGTTAAATGGTGCATTCTTTACTTCTTCTGGAGCAGGTGCATCTTCAAGCTATGCAAGAGCTTCAAGTTTGGC 1127 0.4419 MATPLPFMLLLLFLAPSIISSSPVQDPELVVEEVHSIMNASRRNLGFLSCGSGNPIDDCWRCDSNWEKNRKRLADCAIGFGKHAIGGRDGKIYVVTDTGDDPVSPKPGTLRYGVIQEEPLWIIFKRDMVIKLKEELMMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAYVRDSPSHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLVDAIRGSTAITISNNYMTHHNKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWKMYAIGGSAAPTINSQGNRFLAPNDNTFKEVTKREDTPKSKWKNWNWRSNGDLMLNGAFFTSSGAGASSSYARASSLA 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91981g00001 376 SUPERFAMILY Pectin lyase-like 54 367 IPR011050 -
Stsc91981g00001 376 Pfam Pectate lyase 133 318 IPR002022 -
Stsc91981g00001 376 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Stsc91981g00001 376 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Stsc91981g00001 376 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Stsc91981g00001 376 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Stsc91981g00001 376 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Stsc91981g00001 376 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Stsc91981g00001 376 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Stsc91981g00001 376 Gene3D - 53 376 IPR012334 -
Stsc91981g00001 376 FunFam Pectate lyase 53 376 - -
Stsc91981g00001 376 SMART amb_all 127 324 IPR002022 -
Stsc91981g00001 376 PANTHER PECTATE LYASE 18-RELATED 32 373 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91981g00001 Stsc-Chr91981 13373 15414 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91981g00001 1 364 Polysaccharide Lyase AT5G63180 82.289 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91981g00001 K01728 - gmx:100782388 692.189