Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91979g00003 ATGGAATCAGAAGAGCAAGCCTCGGAGCCTAGGACCGGTGGGTTTCGACCTCAGATAGAAAGTCAGAAGTTCAGCTCAGAAAATCCCTTTTTCATAGTCAAAATAATGCAAGATAACCTATCGAGATCAAGGACGACCATACCAAATGCCTTCTTCACGAAGTATTTTAAAAAGAAGCAGCCAAATGTAAAGATACAGTTCGAAAACAAGTTGTGGCCTGCAAAGTTGCTCTATTATCCCTCATTGTATAAGGCCTATATCTCCAGTGGTTGGCAGCCTTTTATTCTTCCTAGTAATTTAAAAGCAGGTGATGTTTGTGTCTTTGAGCTCATCAAAGTAGAAGAACGAGTGCTTGATGTTCATATTTATAGAGCTGATGGTTAG 384 0.401 MESEEQASEPRTGGFRPQIESQKFSSENPFFIVKIMQDNLSRSRTTIPNAFFTKYFKKKQPNVKIQFENKLWPAKLLYYPSLYKAYISSGWQPFILPSNLKAGDVCVFELIKVEERVLDVHIYRADG 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91979g00003 127 Pfam B3 DNA binding domain 30 125 IPR003340 GO:0003677
Stsc91979g00003 127 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 20 126 IPR044837 -
Stsc91979g00003 127 SUPERFAMILY DNA-binding pseudobarrel domain 24 126 IPR015300 -
Stsc91979g00003 127 MobiDBLite consensus disorder prediction 1 22 - -
Stsc91979g00003 127 SMART B3_2 30 126 IPR003340 GO:0003677
Stsc91979g00003 127 ProSiteProfiles B3 DNA-binding domain profile. 30 126 IPR003340 GO:0003677
Stsc91979g00003 127 CDD B3_DNA 30 124 IPR003340 GO:0003677
Stsc91979g00003 127 Gene3D - 17 126 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91979g00003 Stsc-Chr91979 12482 12973 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91979g00003 21 126 B3 DNA Binding Superfamily AT3G18990 36.449 1.31e-15 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc91979g00003 B3 2.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91979g00003 - - adu:110272500 145.591