Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91979g00002 ATGGCTTCCTCTAGCTTTCAACCAATGAACCAATCTCCTTCCACTGTGATCCGTTTGTTTAAGATTGTTCTCAGCAAAAGTCTCCAAGCTGGAACTCTTAAGATACCAAGAAAGTTCAGTAGGAAATATGGTGGTGATGTGCGGAATCCAGTGTATCTCAAGCCTCCAGACGGCACACAATGGAAGATAGATTGGACTAATCATGATGGTGAGATTTTGTTTGAAAATGGTTGGAAAGAGTTTGCTGCATATTACTCTCTACATGATGGGCACTTGTTGTGGTTTGAATTTAAAGAAACTTCTCTTTTTGAGGTACACATATTTGACATGAGTGGCCTTGAAATAGACTATCCTCTCAATGATCAGACTGATGATGATTCTGTTGAGATATTGAATAAGCCCCCGCCACGACCAAGGAAACGGTCGAAAGCAGCATTATTGTCTCCTTCTACAACGAGACAATTGAGAAGTGCCACAAAAACTAGAGATGTTGAAAGAGAATTCTATCCTGGAACGAGGGGGTTTAAGGCTCTGAAAGAAGCTCAGAAGTTCAGTTCAGAAAATCCCTTTTTCATTGTCAAGATAAGGCAAACTATACGTACAAGTGCTAATTTGCCTGCTTCCTTTTTCACAAAATATTTCAAAAATGAGCAGCAAAAAGTAAAGTTAAGGTTTGAGGGGAGGTTGTTTCCTGCAAAGTTGTGCTACTATCGACATTGTTATACTGCCCTTATCTCTGCCGGTTGGCCCCATTTTGTTCGAGCAAGTAAATTACAAACTGGGGATGTTATTCTGTTTGAGCTTGTCGATAAAGATGATCCGGTTTTTGAAGCTCATCTTTATAGAGCCCAAGCTTTCAAGTCTCGGTCGGGCGGGTTTCAGTATCTGAAAGCAGCTCAGAATTTCAAGTCAGAAAATCCCTCTTTCATGATCAAGATAACACATCCTAGTGTATTGAAGAAAGCTGGTGCCATACCAACTCGCTTCTTCACAAAGTATCTTGCAAAGAAGAAGCCGAATATGAACATAAGGATGGGAAGCAAGTTGCTGCCAGTAAAGTTGCTCTATTATCCATCATTTAGTGCTGCTTATATCTCTGCCGGTTGGAACGCTTTTATTGTTGCCAGTAATTTAAAAGCTGGAGATGTTTGTATCTTTGAGCTTGCAAATGAAAAAGATCAAGTGCTCAATGTTCATATTTATCGAGACGGTGAAGAACTTCAGGAGCTCTTTAACTAA 1239 0.4011 MASSSFQPMNQSPSTVIRLFKIVLSKSLQAGTLKIPRKFSRKYGGDVRNPVYLKPPDGTQWKIDWTNHDGEILFENGWKEFAAYYSLHDGHLLWFEFKETSLFEVHIFDMSGLEIDYPLNDQTDDDSVEILNKPPPRPRKRSKAALLSPSTTRQLRSATKTRDVEREFYPGTRGFKALKEAQKFSSENPFFIVKIRQTIRTSANLPASFFTKYFKNEQQKVKLRFEGRLFPAKLCYYRHCYTALISAGWPHFVRASKLQTGDVILFELVDKDDPVFEAHLYRAQAFKSRSGGFQYLKAAQNFKSENPSFMIKITHPSVLKKAGAIPTRFFTKYLAKKKPNMNIRMGSKLLPVKLLYYPSFSAAYISAGWNAFIVASNLKAGDVCIFELANEKDQVLNVHIYRDGEELQELFN 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91979g00002 412 SUPERFAMILY DNA-binding pseudobarrel domain 302 402 IPR015300 -
Stsc91979g00002 412 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Stsc91979g00002 412 CDD B3_DNA 307 402 IPR003340 GO:0003677
Stsc91979g00002 412 MobiDBLite consensus disorder prediction 126 146 - -
Stsc91979g00002 412 CDD B3_DNA 18 109 IPR003340 GO:0003677
Stsc91979g00002 412 Gene3D - 173 286 IPR015300 -
Stsc91979g00002 412 Gene3D - 293 405 IPR015300 -
Stsc91979g00002 412 Pfam B3 DNA binding domain 309 402 IPR003340 GO:0003677
Stsc91979g00002 412 Pfam B3 DNA binding domain 24 109 IPR003340 GO:0003677
Stsc91979g00002 412 Pfam B3 DNA binding domain 204 278 IPR003340 GO:0003677
Stsc91979g00002 412 Gene3D - 15 112 IPR015300 -
Stsc91979g00002 412 ProSiteProfiles B3 DNA-binding domain profile. 188 284 IPR003340 GO:0003677
Stsc91979g00002 412 SUPERFAMILY DNA-binding pseudobarrel domain 184 282 IPR015300 -
Stsc91979g00002 412 ProSiteProfiles B3 DNA-binding domain profile. 308 404 IPR003340 GO:0003677
Stsc91979g00002 412 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 296 406 IPR044837 -
Stsc91979g00002 412 SUPERFAMILY DNA-binding pseudobarrel domain 17 111 IPR015300 -
Stsc91979g00002 412 SMART B3_2 20 111 IPR003340 GO:0003677
Stsc91979g00002 412 SMART B3_2 309 404 IPR003340 GO:0003677
Stsc91979g00002 412 SMART B3_2 190 284 IPR003340 GO:0003677
Stsc91979g00002 412 CDD B3_DNA 189 282 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91979g00002 Stsc-Chr91979 9106 11275 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91979g00002 272 409 B3 DNA Binding Superfamily AT3G18990 30.556 8.84e-13 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc91979g00002 B3 1.8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91979g00002 - - adu:107471605 409.453