Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91959g00005 ATGGGGACTCCGGCATTCCCTAACCTAGGCAAGCATTGCTCCGTTTCCGATTGCAAGCTCATCGATTTCTTGCCCTTCACTTGCGATCGCTGCAATCAGGTATATTGTTTGGAGCATCGAAGTTATATTAAACATAATTGTACAAAGCCCAACAAAAATGATGTCACTGTTGTTATATGTCCTCTTTGTGCCAAAGGAGTTCGCCTAATTCCAGATCAAGATCCGAATATAACTTGGGAGAATCATGTTAACGCTGAATGTGATCCGTCAAATTATGAGAAAGCCACAAAGAAGAAAAAATGCCCTGCCCCTGGATGCAGAGAGGTGTTAGTATTCTCAAACACTATCAAGTGCAGGGACTGCATGGTAGACCATTGTTTGAAGCACCGCTTTGGACCTGCGCACAAGTGTCCTGGTCCCAAAAAGTTGGAAACAAGCTTTTCATTTATGAGTCTTATGAATAGGAGTAGAAAAGAGGAGCCAAAACCCAATTTAACTTCAGCCTCATCATCTAAATGGAGTTCAGGCCTTTATAATGTAGCTTCTAGTATTCTAGCTTCAGCCGAAGCAGGCATTTCCAAATTGAGCGGCGAAACTAACCAAAGCCAGCAGACAACAAGGAATGGGACGGGACAAAGCAGTGGCAGTGGACATAGAAACGGTCTAGTGGAGCAATGTCCTCAGTGTGGCGCCAAGTTTTCCTCGGTCACCACCTTGGTCGATCATGTGCAAAAAGTTCATGAAAGGAGTGGCAACCGTTCTTCTGGGGCAAAGAAGGTGACAATTGATGCATGTCCAAAGTGTAGTAGGGGATTTGTAGACCCGGTTGCTCTTGTGGAACATGTTGAGAGGGAACATGGTGGTAGTTCCAGAGCTTAG 879 0.4494 MGTPAFPNLGKHCSVSDCKLIDFLPFTCDRCNQVYCLEHRSYIKHNCTKPNKNDVTVVICPLCAKGVRLIPDQDPNITWENHVNAECDPSNYEKATKKKKCPAPGCREVLVFSNTIKCRDCMVDHCLKHRFGPAHKCPGPKKLETSFSFMSLMNRSRKEEPKPNLTSASSSKWSSGLYNVASSILASAEAGISKLSGETNQSQQTTRNGTGQSSGSGHRNGLVEQCPQCGAKFSSVTTLVDHVQKVHERSGNRSSGAKKVTIDACPKCSRGFVDPVALVEHVEREHGGSSRA 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91959g00005 292 MobiDBLite consensus disorder prediction 196 221 - -
Stsc91959g00005 292 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Stsc91959g00005 292 Gene3D Classic Zinc Finger 195 289 - -
Stsc91959g00005 292 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Stsc91959g00005 292 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Stsc91959g00005 292 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Stsc91959g00005 292 Gene3D - 3 60 IPR035896 -
Stsc91959g00005 292 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Stsc91959g00005 292 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Stsc91959g00005 292 SMART c2h2final6 263 286 IPR013087 -
Stsc91959g00005 292 SMART c2h2final6 224 247 IPR013087 -
Stsc91959g00005 292 ProSitePatterns Zinc finger C2H2 type domain signature. 265 286 IPR013087 -
Stsc91959g00005 292 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Stsc91959g00005 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 291 IPR013087 -
Stsc91959g00005 292 Gene3D - 80 151 IPR035896 -
Stsc91959g00005 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 252 IPR013087 -
Stsc91959g00005 292 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 254 - -
Stsc91959g00005 292 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Stsc91959g00005 292 ProSitePatterns Zinc finger C2H2 type domain signature. 226 247 IPR013087 -
Stsc91959g00005 292 Pfam C2H2-type zinc finger 225 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91959g00005 Stsc-Chr91959 8674 10973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91959g00005 1 292 C2H2 Transcription Factor Family AT2G41835 62.245 2.18e-123 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc91959g00005 zf-AN1 2.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91959g00005 - - gmx:100806459 494.197