Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91927g00001 ATGGATATGAAAAGAAGGGTAAACAACGAAAACGATGACGACAGCAACAACGACGAAGAAATGAACCTCCGAAGAGGTCCTTGGACGGTGGACGAAGACCTTGCTCTCATCAATTACATTGCCAATCATGGCGAAGGTCGCTGGAATTCTCTTGCCCACTCTGCCGGACTCAAACGAACCGGCAAGAGCTGCAGATTGAGATGGTTGAATTATTTGCGCCCAGATGTTAGACGTGGTAACATCACTCTTGAAGAACAGCTTCTTATTCTTGAGCTACATGCTCGTTGGGGAAACAGGTGGTCCAAAATTGCTCAATACCTACCTGGAAGGACCGACAATGAAATCAAGAACTATTGGAGAACTCGTGTTCAAAAGCATGCCAAACAACTCAAATGTGATGTAAATAGCAAGCAATTCAAGGACACCATGCGCTTCCTTTGGATGCCAAGACTAGTGGAGCGAATCCAGGCTGCCGCTGCTGCTGCAGCCACAACTACTGCACCAGCCGCACCTGGATCTCCAACCTTATCAGCCACCACATCAGTCACCACCGTTAATAACAACAACACTACTATTCCATACAACAACTACGACAACCTTAACAACAACAACTTTGAGGTTCATAGTGGGAATATTCATATGAATATGAGCAACAACTTTGGTTATGCTACTCCAGAGAATAGTAGCACAGGAACGTCGTCCGATTCTTTTGTGACACAAGATTATTACAACAACAATAATGTTCATCATGTTGGTAACAACAACAATAATAATAACCCTAATTCGGATTATTACCACCAACAAGGGAATAATAATAACCAAGTCAGCTTCATGGATTGCATCACTAGTCCATCCTCCATGTCATTGTTCCCTCATCAAGAGATGGATTTCCAAGCCATGGAATTACCAAACACCCCTTGGATTAACAATAATCACACTACATTCAGCAATTTCTGGAATGATGAAAACATGTTGCTCCTACAAGGTCTAGGAGGTGGTGACAACGTGAGAATTGATTGGGAGAAAGGGATATAG 1035 0.4309 MDMKRRVNNENDDDSNNDEEMNLRRGPWTVDEDLALINYIANHGEGRWNSLAHSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHARWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRFLWMPRLVERIQAAAAAAATTTAPAAPGSPTLSATTSVTTVNNNNTTIPYNNYDNLNNNNFEVHSGNIHMNMSNNFGYATPENSSTGTSSDSFVTQDYYNNNNVHHVGNNNNNNNPNSDYYHQQGNNNNQVSFMDCITSPSSMSLFPHQEMDFQAMELPNTPWINNNHTTFSNFWNDENMLLLQGLGGGDNVRIDWEKGI 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91927g00001 344 CDD SANT 93 121 IPR001005 -
Stsc91927g00001 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Stsc91927g00001 344 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Stsc91927g00001 344 SUPERFAMILY Homeodomain-like 21 119 IPR009057 -
Stsc91927g00001 344 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Stsc91927g00001 344 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Stsc91927g00001 344 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Stsc91927g00001 344 FunFam MYB transcription factor 82 145 - -
Stsc91927g00001 344 SMART sant 24 74 IPR001005 -
Stsc91927g00001 344 SMART sant 77 125 IPR001005 -
Stsc91927g00001 344 CDD SANT 27 72 IPR001005 -
Stsc91927g00001 344 MobiDBLite consensus disorder prediction 1 24 - -
Stsc91927g00001 344 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 215 IPR044676 GO:0003700|GO:0006355|GO:0043565
Stsc91927g00001 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
Stsc91927g00001 344 FunFam Myb transcription factor 25 77 - -
Stsc91927g00001 344 Gene3D - 82 144 - -
Stsc91927g00001 344 Gene3D - 22 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91927g00001 Stsc-Chr91927 9657 12206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91927g00001 6 260 MYB Transcription Factor Family AT5G49620 56.877 3.27e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc91927g00001 Myb_DNA-binding 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91927g00001 K09422 - gmx:100805341 386.341