Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91912g00001 ATGGACGATACAAGAAGGAATGAACTCCAAGAAAGTGCGAATTCGAAGCGGAGAATCGCCATGATAGGCATATCAACCGTGATACTAGTTGCTATGGTGGTGGCGGTTACGGTGGGTGTGAGTCAAACCGATAATGGCGACGAAAAAAGCAACAGAGATAAGAACCATGTGGCTTCGACGGTTAAAGCAGTTAAAGCCCTTTGCGAGCCAGCAGATTATAAGAAAGAATGTGAGGAGAGCCTGACAGCAGAAGCTGGTAACACGACGGAGCCAAGAGAACTCATCAAGATTGCATTTAATGTGACGATTGAAAAGATTCGTGTTGGGCTCCAGAAATCACATCTCTTGCAAGAGGCTGAGAAGGAGCCTAGGGCAAAGATGGCGCTTGACACGTGTAAGCAGCTCATGAATCTCTCCATTAGCGAGTTTACAAGGTCCCTTGACGGGATATCACAGTTTAATCTCAACAACCTCGACGAAATCCTCACCAGCCTGAAGGTATGGCTTAGCGGTGCAGTGACATATCAAGAGACATGCTTGGATGCATTTCAGAACACAACAAGCCACGCCGGTCAAAAGATGAAGGAAGCGTTGACCAATTCAATGAAGATGAGCAGCAACGCCCTAAGCATAATCACAGAACTCGCAAAAACTTTCTCAGATTTAGAGGTAAAGGATGAAAACGATGGCTCTCGCCGTCACCTCCTCACTGATGATCTTCCACCGTGGGTTGATTATGGTGCTGGTGTACGTAGGCTCCTCCTTAATTCGAGTCCACGGAAGCTGCAGCCCAATTTGATTGTGGCCAAAGATGGGAGCGCAAAGTTCAGCAGCATCAATGAGGCTTTGAAGAAAGTTCCTATGAAGAACATGAAGCCATTTGTGATACTCATAAAGAAAGGGGTTTACAAAGAGTATGTTGAGGTTACTAGGGAAATGAGACATGTTGTGTTTGTTGGTGAAGGTAGCGATAAGACACGAATCACTGGCAGCAAAAACTTCATTGATGGGGTTAACACTTATAAAACTGCTTCAGTAGCAATTCTAGGAGATTACTTTACGGCCATACACATGGGGTTTGAGAACACCGCAGGTGCCCAGAAACACCAAGCAGTAGCAATAAGAGTCCAAGCAGACAAATCCATCTTTTACAAATGCGCATTCGATGGCTACCAAGACACACTCTACGCTCACACCATGCGTCAATTCTACCGCGACTGCACCATCTCCGGCACCATCGACTTCATCTTCGGCGACGCCGTCTCCGTCTTCCAAAACTGCACCTTCCTCGTCCGACAACCAATGCAAAACCAGCAGTGCATCGTCACCGCGCAAGGCCGCAAGGAGAGGCACCAACCTTCCGGGATAGTCATCCATGGCGGCTCAATCGTGGCGGATCAACCGCCAGGAAACAAATCAATAGATCATAGCAAAGAGAAAGTGAAGTTCGATAGCAAAGCTTACTTGGCGCGTCCATGGAAGAATTTCTCGAGGACGGTGTTCTTGGAAACCTACATCGATGATTTGATTGTGCCTGAAGGGTACATGCCATGGCAAGGGCCAGAAGGTAACACGGGCATGGACACTTGCTTCTATGCAGAGTATAAAACCACTGGACCCGGTTCGGATGTAACGAAGCGCGTGAAATGGCTTGGAATCAAGCACCTCAGTGAAAGTTCTATAAGCAAGTACATGCCATCGAGGTTCTTTCATGGCGATGATTGGATTGAGATTACTAAGATTCCTTACTCCCCGGGCTTAACTAATTTTACCAAGCACAAAACTTAA 1788 0.4692 MDDTRRNELQESANSKRRIAMIGISTVILVAMVVAVTVGVSQTDNGDEKSNRDKNHVASTVKAVKALCEPADYKKECEESLTAEAGNTTEPRELIKIAFNVTIEKIRVGLQKSHLLQEAEKEPRAKMALDTCKQLMNLSISEFTRSLDGISQFNLNNLDEILTSLKVWLSGAVTYQETCLDAFQNTTSHAGQKMKEALTNSMKMSSNALSIITELAKTFSDLEVKDENDGSRRHLLTDDLPPWVDYGAGVRRLLLNSSPRKLQPNLIVAKDGSAKFSSINEALKKVPMKNMKPFVILIKKGVYKEYVEVTREMRHVVFVGEGSDKTRITGSKNFIDGVNTYKTASVAILGDYFTAIHMGFENTAGAQKHQAVAIRVQADKSIFYKCAFDGYQDTLYAHTMRQFYRDCTISGTIDFIFGDAVSVFQNCTFLVRQPMQNQQCIVTAQGRKERHQPSGIVIHGGSIVADQPPGNKSIDHSKEKVKFDSKAYLARPWKNFSRTVFLETYIDDLIVPEGYMPWQGPEGNTGMDTCFYAEYKTTGPGSDVTKRVKWLGIKHLSESSISKYMPSRFFHGDDWIEITKIPYSPGLTNFTKHKT 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91912g00001 595 SMART PMEI_2 59 211 IPR006501 GO:0004857
Stsc91912g00001 595 ProSitePatterns Pectinesterase signature 2. 409 418 IPR033131 -
Stsc91912g00001 595 Gene3D Invertase/pectin methylesterase inhibitor family protein 59 217 IPR035513 -
Stsc91912g00001 595 Gene3D - 259 587 IPR012334 -
Stsc91912g00001 595 SUPERFAMILY Pectin lyase-like 263 586 IPR011050 -
Stsc91912g00001 595 FunFam Pectinesterase 259 587 - -
Stsc91912g00001 595 NCBIfam pectinesterase inhibitor domain 57 215 IPR006501 GO:0004857
Stsc91912g00001 595 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 63 215 IPR035513 -
Stsc91912g00001 595 FunFam Pectinesterase 60 216 - -
Stsc91912g00001 595 CDD PMEI-like_3 66 217 - -
Stsc91912g00001 595 Coils Coil 587 595 - -
Stsc91912g00001 595 PANTHER PECTINESTERASE 26 577 - -
Stsc91912g00001 595 Pfam Plant invertase/pectin methylesterase inhibitor 63 211 IPR006501 GO:0004857
Stsc91912g00001 595 Pfam Pectinesterase 265 573 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91912g00001 Stsc-Chr91912 1651 5500 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91912g00001 16 587 Carbohydrate Esterase AT3G05610 48.776 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91912g00001 K01051 - gmx:100794799 763.451