Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91883g00002 ATGAAAAAGCGCCAAGTGGTCATGCTTAGAAGAGTAGATTCCGCTGCTGCTGGCTACGGCAACAACGGTGGTTCTCCTCCTCCTCCTCTTCCTCCATCTTCGAATAATAATGTTGTTAGGTACGCAGAGTGCCTCAAGAATCATGCTGCTAACAGCGGAGGCTATGCTTTGGACGGTTGCCGAGAGTTCATGGCTAGCTCCGGTGAAGGGACCACCGGTGCTCTTACCTGTGCCGCTTGTGGCTGCCATAGAAACTTCCATAGAAAAAAGGAATTAGTCAACGCTGCACCAACCAGGTAG 300 0.51 MKKRQVVMLRRVDSAAAGYGNNGGSPPPPLPPSSNNNVVRYAECLKNHAANSGGYALDGCREFMASSGEGTTGALTCAACGCHRNFHRKKELVNAAPTR 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91883g00002 99 MobiDBLite consensus disorder prediction 16 36 - -
Stsc91883g00002 99 Pfam ZF-HD protein dimerisation region 39 91 IPR006456 -
Stsc91883g00002 99 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 41 90 IPR006456 -
Stsc91883g00002 99 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 40 90 IPR006456 -
Stsc91883g00002 99 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 29 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91883g00002 Stsc-Chr91883 12711 13010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91883g00002 1 90 ZF-HD Transcription Factor Family AT1G74660 56.667 4.85e-28 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc91883g00002 ZF-HD_dimer 3.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91883g00002 - - ahf:112722499 130.568