Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91879g00001 ATGATGAAAAAGGAAGAAGATCATCATCATCAAGGTCAGTGTTCTCCGCAAACAATCCACAACACCATTCAAAGCTTCCAAGAACAGTTATTCCTTCAGCAGCAGATGCAGCAGCATCACAACCCAAACGGTACTGAAATCTACATAGGCGGCAGTGACGGCGGCGGCGGCGGAGGCGGAAGCGGAAGCGGAAGTGGAAGAGGGTTAATGTTCCCTCCTGAAGCCTCTCCAATCATGCAACCACCATGGTCTATCCCATCGGTTCACCCTTTCAACCAAGCCAGTCCGGTTCACCCGGTACCCGGCCATAACAATAATAATAATAACCTCAGCCACGATCCTTTTCTTGTTCCTCCGCCGCCTCCGTCGCCGTACGCAAGTTTCTTCAACAGAAGGGTTCCGTCTCTGCAGTTCGCATACGAGGGGCCTTCTTCTGAACACCTCAGGATCATATCTGATACGCTTGTTGGGCCCATGGTTCATCAGCCCGGTTCTGTGGGCCCGTTTGGGCTCCAGGCCGAGCTTGGCAAGATGACTGCCCAAGAAATCATGGAGGCTAAAGCTCTTGCGGCCTCCAAGAGTCACAGCGAAGCTGAAAGGAGACGCAGAGAGAGAATCAATAACCACCTTGCCAAGCTCCGAAGCTTGTTGCCAAACACAACTAAAACAGATAAAGCTTCATTGCTAGCAGAAGTGATTCAACACGTGAAGGAACTGAAGCGTCAAACATCACTGATAGCAGAAACAAATCCAGTTCCCACAGAATCCGACGAGTTAACCGTGGATACGACGGACGAAGACGGAAGGTTTGTGATCAAAGCTTCTTTGTGCTGTGAAGACAGGTCCGATCTCTTACCGGACCTCATCAAGACACTGAAGGCATTGAGGCTGAGAACTCTCAAAGCCGAGATCACCACGCTCGGCGGCCGCATGAAGAATGTGTTGTTCATCACCGGGGAAGAAGAAGATTCTAGTAGCAACGGCAGCAATGGCGGAGGAGAGCAAAGTCTTCAGCTGGGGCAGTATTGTATTAGCTCAATACAAGAAGCACTTAGGGCAGTCATGGAGAAAGGTGGCGGTGATGAATCCGCTTCTGGGAATGTTAAGAGGCAAAGGACAAATATCAATATCCTTGAACAAAGGTCTTTATGA 1152 0.4991 MMKKEEDHHHQGQCSPQTIHNTIQSFQEQLFLQQQMQQHHNPNGTEIYIGGSDGGGGGGGSGSGSGRGLMFPPEASPIMQPPWSIPSVHPFNQASPVHPVPGHNNNNNNLSHDPFLVPPPPPSPYASFFNRRVPSLQFAYEGPSSEHLRIISDTLVGPMVHQPGSVGPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETNPVPTESDELTVDTTDEDGRFVIKASLCCEDRSDLLPDLIKTLKALRLRTLKAEITTLGGRMKNVLFITGEEEDSSSNGSNGGGEQSLQLGQYCISSIQEALRAVMEKGGGDESASGNVKRQRTNINILEQRSL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91879g00001 383 PANTHER TRANSCRIPTION FACTOR BHLH30 37 375 IPR045847 GO:0003700|GO:0006355
Stsc91879g00001 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 248 IPR036638 GO:0046983
Stsc91879g00001 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 190 239 IPR011598 GO:0046983
Stsc91879g00001 383 Gene3D - 185 246 IPR036638 GO:0046983
Stsc91879g00001 383 MobiDBLite consensus disorder prediction 37 83 - -
Stsc91879g00001 383 FunFam transcription factor bHLH30 185 248 - -
Stsc91879g00001 383 CDD bHLH_AtAIG1_like 185 262 - -
Stsc91879g00001 383 SMART finulus 196 245 IPR011598 GO:0046983
Stsc91879g00001 383 Pfam Helix-loop-helix DNA-binding domain 193 239 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91879g00001 Stsc-Chr91879 7487 11706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91879g00001 21 381 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 55.440 9.36e-106 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc91879g00001 HLH 2.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91879g00001 - - cave:132184452 416.001