Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91871g00001 ATGGAGGGAAAAGATGAAGATGTGAGAGTTGGAGCAAATAGGTACAGAGAGAGACAAGCAATAGGAACAGCAGCACAAGCAGAACAAGATGGAAAAGACTACAAGGAACCACCATCAGCACCATTTTTGTTTGAGCCTGGTGAATTGTCATCTTGGTCCTTCTACAGGGCATGCATAGCTGAGTTTGTGGCCACGTTTTTGTTCCTTTACATCACAGTGTTGACGGTTATGGGTGTGGCTAAATCCAGTAGCAAGTGCAACACTGTTGGTGTGCAAGGGATTGCTTGGTCTTTTGGTGGCATGATCTTTGCTCTTGTCTATTGTACTGCAGGCATCTCAGGGGGTCACATTAACCCAGCAGTGACATTCGGTATGTTGTTGGCAAGAAAGCTGTCACTAACAAGAGCAGTGTTCTACATAATCTTTCAGTGCTTGGGAGCCATTTGTGGTGCTCTGGTTGTGAAGGGGTTCCAACCACACCAATATGAAAGGCTTGGTGGTGCTGCCAACTCTGTTAGCAGAAGCTACTCCAAAGGCGGTGGTCTTGGTGCCGAGATTGTTGGCACTTTTGTTCTTGTTTACACTGTTTTTTCTGCCACTGATGCCAAAAGAAATGCCAGAGATTCCCATGTTCCTATTTTGGCACCATTGCCTATTGGTTTTGCTGTATTTTTGGTGCATTTGGCTACAATTCCAGTGACTGGAACTGGTATCAATCCAGCTAGAAGTCTTGGTGCAGCCCTTGTGTACAACAAGGACCAAGCTTGGGATGACCATTGGATCTTCTGGGTAGGCCCTTTCATTGGGGCAGCACTTGCAGCTTTGTACCATCAAATTGTGATCAGAGCTATTCCCTTCAAGTCAAAGTAA 870 0.4575 MEGKDEDVRVGANRYRERQAIGTAAQAEQDGKDYKEPPSAPFLFEPGELSSWSFYRACIAEFVATFLFLYITVLTVMGVAKSSSKCNTVGVQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGMLLARKLSLTRAVFYIIFQCLGAICGALVVKGFQPHQYERLGGAANSVSRSYSKGGGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPVTGTGINPARSLGAALVYNKDQAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKSK 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91871g00001 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 285 IPR034294 -
Stsc91871g00001 289 ProSitePatterns MIP family signature. 116 124 IPR022357 -
Stsc91871g00001 289 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc91871g00001 289 PRINTS Major intrinsic protein family signature 56 75 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc91871g00001 289 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc91871g00001 289 PRINTS Major intrinsic protein family signature 135 154 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc91871g00001 289 PRINTS Major intrinsic protein family signature 98 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc91871g00001 289 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc91871g00001 289 NCBIfam MIP family channel protein 60 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc91871g00001 289 Pfam Major intrinsic protein 48 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc91871g00001 289 Gene3D Glycerol uptake facilitator protein. 42 288 IPR023271 -
Stsc91871g00001 289 SUPERFAMILY Aquaporin-like 49 282 IPR023271 -
Stsc91871g00001 289 CDD MIP 56 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc91871g00001 289 FunFam Probable aquaporin PIP1-2 40 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91871g00001 Stsc-Chr91871 7852 10603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91871g00001 1 289 Major Intrinsic Protein MIP AT3G61430 80.969 1.16e-169 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91871g00001 K09872 - cave:132192212 525.398