Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91845g00004 ATGACGAGCGCTTCGGAGCTATTCCACACCAGGAGGCATCGTTTGGGACGATACAATAATCTAGGGCTTGACTCCGACCATGTTCCCGACCTCCACCATCCTCGCCGCCATTCTCGCCGCCTCCCTCATCCTCCCTCTTCCGAGCGTGCAGCAGTTGACAGATTTGAGAGGAGGTATCGGCGCTCTCTGTTGAATACGGAAAGCACGAGAGGAGTGGGTGCTCCTCCAAGATTGAATCCCTCTGATAGACTCCCTGTAGGCGTCTTACTTGCACGCGCTAGGCTCCTTGAGAGACTCAGAGGAGACCCTCTCTCACCTAACAGGCAATATGAAAGAGATTCAAATCCAATAATCAGGGATCTAGAAAGTGATTTTGTTTCCGACTTGACTTCTCAGATGGGAAGGTCCCATCTATTGCAAGAAAAACCACCTGGACTCACTCAGGAAGCCCTAGACTGTTTACATGTTCAAGTTTTTAGCAGCAGGGATGCAGGTCAGGAGTGCAGCATATGCTTGGAATCTTTTGTGGATGGGGATGAGCTCATATGTTTGCCATGCCACCATAAATTTCACTCTGCTTGTTTGGATCCCTGGGTTCGCTCTTGCGGAGACTGTCCATACTGTCGACGACGTATACTTGTAAATAACAACCAACACAGGCGGCTCAGTAGTGAGTAG 678 0.5 MTSASELFHTRRHRLGRYNNLGLDSDHVPDLHHPRRHSRRLPHPPSSERAAVDRFERRYRRSLLNTESTRGVGAPPRLNPSDRLPVGVLLARARLLERLRGDPLSPNRQYERDSNPIIRDLESDFVSDLTSQMGRSHLLQEKPPGLTQEALDCLHVQVFSSRDAGQECSICLESFVDGDELICLPCHHKFHSACLDPWVRSCGDCPYCRRRILVNNNQHRRLSSE 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91845g00004 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 213 IPR013083 -
Stsc91845g00004 225 MobiDBLite consensus disorder prediction 19 49 - -
Stsc91845g00004 225 SUPERFAMILY RING/U-box 167 215 - -
Stsc91845g00004 225 Pfam Ring finger domain 167 209 IPR001841 -
Stsc91845g00004 225 SMART ring_2 168 208 IPR001841 -
Stsc91845g00004 225 ProSiteProfiles Zinc finger RING-type profile. 168 209 IPR001841 -
Stsc91845g00004 225 PANTHER SI:CH211-59O9.10 32 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91845g00004 Stsc-Chr91845 15270 16637 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91845g00004 1 212 C3H Transcription Factor Family AT1G49850 39.535 7.09e-39 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91845g00004 - - aip:107619305 329.717