Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91803g00001 ATGAAGCTTTCAACATCAGGGTTGCCTCAGCAGGGACAACATGAAGGAGGGGAGAAGAAGTGCTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCATTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAGTTGATGGCCACATACCAAATTACCCGAGCTTGCCTCCCCAGTTGATTTGCCAACTTCACAATGTCACGATGCATGCAGATGTTGAAACAGATGAAGTTTATGCCCAAATGACATTGCAGCCGTTGACTCCGCAAGAGCAAAAGGATACGTTTCTTCCCATGGAATTGGGAGTTCCAAGTAAGCAGCCCTCAAATTATTTTTGCAAGACCTTGACGGCTAGTGACACCAGCACACATGGAGGGTTCTCCGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCGCTGGATTTCTCACAGCAACCGCCTGCACAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAATTTCGTCATATTTTTAGGGGACAGCCAAAGAGGCATCTTCTCACTACTGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTTGTGGCAGGAGATTCTGTGCTTTTCATATGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGCCGTGCCAGTCGACCACAAACTGTAATGCCTTCTTCAGTTCTATCCAGTGACAGTATGCATATTGGGCTTCTTGCAGCTGCAGCCCATGCTGCAGCAACTAATAGTTGTTTCACTGTGTTCTATAATCCAAGGGCTAGTCCGTCCGAGTTTGTCATACCACTTTCAAAGTATATCAAAGCTGTATACCATACACGTGTTTCTGTCGGTATGCGTTTCAGGATGCTTTTCGAGACTGAAGAATCAAGTGTCCGGAGGTACATGGGTACAATAACTGGAATAAGCGACTTGGATCCAGTTCGTTGGCCAAATTCTCATTGGCGGTCTGTAAAGGTTGGTTGGGATGAATCCACAGCAGGAGATAGGCAGCCACGAGTATCATTATGGGAAATCGAGCCTTTATCAACATTCCCAATGTATCCATCACTATTTCCGCTCAGATTGAAACGTCCATGGCATCCTGGCACCTCATCTTTTCTTGATGGCAGAGATGACGGAACCAGTGGGCTAATGTGGCTGAGAGGTGGACCTGGCGACCAAGGTCTGAATTCAATCAATTTTCAAAGTGTCGGAATGCTGCCATGGATGCAGCAGAGGATCGATCCGGCTTTGCTTGGAAATGAACATAATCAGCAGTACCAAGCCATGTTGGCAGCTGGTTTGCAGAACATAGGGAATGGAGAACTCTTGAGGCAACAAATGATGAATTTCCAACAGCCTTTCAATTATCTTCAACAATCAGGAAATGTCAACACTCCTATCCAGCTTCAGCAGCAGCAAACGATTCAGCAATCAGTGCCTTCTAATATCTTGCAGACACAAGCACCAGTAATGGCAGAGAACATGTCTCAGCAGCAGCTCTTTCAGAAACCGCACAACAACCAAGAAGACCATGCGCAGCAGCATCAGCAGCACACTTTTCAAGACGCACTTTTAGTTCAGGGTGACCAGCTCCACCAAAGGCAACACTCTAGTTTGCCTTCGCCATCTTATTCGAAATCGGAGTTTGTAGATTCAAGCATAAAGTTTGAAGCATCAGGTTCACCAGGACAGAACATGCTTGGTTCACTTTGTCCTGAAGGGAGCAGCAATCTTTTGAATATATCCCAAGGTGGTCAGTCGATACCAGCAGAATTACCCCAACAATCATGGCCCCCAAAGTATACACCTATGCAGGTTAATGCTTTTGGCAACTCAGTGTCACATGTGCAATATTCTGGAAAAGATATTGCAGTGGCATCACTACATCGTAATTCAGATACTCAGAATCCGACCCTATTTGGAGTCAATATCGATTCATCTGGTCTTCTGCTCCCCGCCACTGTCCCCCACTATACTACTTCATCTGCTGATACCGATACTTCAACAATGCCATTAGGGGATTCTGGATACCAGGGCCCTCTATATTCTTGCATGCAAGATTCATCTGAGTTAATGCAAAGTGCAGGACAAGTTGACCCCCAAAACCAGATGCCAATATTTGTCAAGGTTTACAAGTCAGGGTCAGTTGGGCGCTCACTTGACATCTCCCGGTTCAGCAGCTATCATGAACTGCGAGAAGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGATATTCTTCTCCTTGGTGACGATCCGTGGGAGTCATTTGTCAACAATGTTTGGTATATCAAAATACTTTCACCTGAAGATATGCAAAAGATGGGAGAACAAGCCGTAGAATCTCGCGACAGTGTTGCTGGCCAACCATCAATAGGCGAATACTGA 2484 0.461 MKLSTSGLPQQGQHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGVPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLSTFPMYPSLFPLRLKRPWHPGTSSFLDGRDDGTSGLMWLRGGPGDQGLNSINFQSVGMLPWMQQRIDPALLGNEHNQQYQAMLAAGLQNIGNGELLRQQMMNFQQPFNYLQQSGNVNTPIQLQQQQTIQQSVPSNILQTQAPVMAENMSQQQLFQKPHNNQEDHAQQHQQHTFQDALLVQGDQLHQRQHSSLPSPSYSKSEFVDSSIKFEASGSPGQNMLGSLCPEGSSNLLNISQGGQSIPAELPQQSWPPKYTPMQVNAFGNSVSHVQYSGKDIAVASLHRNSDTQNPTLFGVNIDSSGLLLPATVPHYTTSSADTDTSTMPLGDSGYQGPLYSCMQDSSELMQSAGQVDPQNQMPIFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDILLLGDDPWESFVNNVWYIKILSPEDMQKMGEQAVESRDSVAGQPSIGEY 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91803g00001 827 ProSiteProfiles PB1 domain profile. 719 803 IPR000270 GO:0005515
Stsc91803g00001 827 SMART B3_2 129 231 IPR003340 GO:0003677
Stsc91803g00001 827 Pfam AUX/IAA family 714 804 IPR033389 -
Stsc91803g00001 827 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 808 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc91803g00001 827 Gene3D - 127 230 IPR015300 -
Stsc91803g00001 827 FunFam Auxin response factor 127 231 - -
Stsc91803g00001 827 FunFam Auxin response factor 714 808 - -
Stsc91803g00001 827 CDD B3_DNA 128 229 IPR003340 GO:0003677
Stsc91803g00001 827 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Stsc91803g00001 827 SUPERFAMILY CAD & PB1 domains 717 793 - -
Stsc91803g00001 827 SUPERFAMILY DNA-binding pseudobarrel domain 113 258 IPR015300 -
Stsc91803g00001 827 Gene3D - 715 808 - -
Stsc91803g00001 827 FunFam Auxin response factor 293 365 - -
Stsc91803g00001 827 Gene3D - 293 365 - -
Stsc91803g00001 827 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Stsc91803g00001 827 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91803g00001 Stsc-Chr91803 9696 17366 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91803g00001 99 811 B3 DNA Binding Superfamily AT5G37020 68.837 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc91803g00001 AUX_IAA 7.4e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91803g00001 - - gmx:100780393 1443.71