Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91758g00004 ATGGCCACTGTAGCAACAACTGGAATAGGAGTAGGCTTAACAAAGCTCCAACCAAACAAATCCCTCTTTCTGAGCCATGGATTCAGAATCAAGCCCTCTTCTCTACTACCATGCAGCAGCAGAAAGAAGCCTCCTTTTCAGGTGTTTGCATTAGGTGGTGGTGTTGGTGTTGGAAGTGAATGGGTTCTTGATTCCATTCACAATCTGTTTGTGGGTGTTGGGGTTGGTCTTCCATGCACTGTGATGGAGTGTGGGGACATAATTTATAGGAGTACACTACCAAAGTCAAATGGGCTGACTCTTACAGTTCCTGGTGTGGTTCTTGCTTTGGGTGCTCTCTCTTACCTTTGGGCAACACCTGGGGTTGCACCTGGTTTCTTTGACATGTTTGTTCTTGCTTTTGTTGAGAGATTGTTCAGACCCACCTATAGAAAGGATGACTTTGTCTTGGGCAAGAAGTTAGGGGAGGGATCGTTTGGAGTAGTTTATAGAGCAACACTGGCCAGGCCCTCTTCAAAGGAAGGTGACGTAGTCTTGAAGAAAGCTACCGAATACGGTGCTGTAGAAATTTGGATGAACGAGCGCGTTCGTAGAGCCTGTGCAAACAGCTGTGCAGATTTTCTATACGGATTTCTTGAGAGCTCTTCAAAGAAAGCTACCGAATACTGGCTTATATGGCGGTTTGAAGGGGATGCTACCCTCGCTGACTTGCTACAAAGTAGAGACTTTCCATACAATGTTGAAACATTGATTCTGGGTGAGGTTCAGGACTTGCCAAAGGGAGTCGAAAGAGAGAACAGAATTATTCAAACAATCATGAGGCAACTGTTGTTTGCATTAGACAGTCTTCACTCAACTGGCATTGTGCATAGGGATATTAAGCCACAGAACATTATTTTCTCCGAAGGGTCGCGAACATTCAAAATCATTGATCTCGGAGCTGCTGCCGACCTGCGAGTTGGCATAAACTATATTCCCAAGGAATTTCTCTTGGATCCAAGATATGCCGCACCAGAGCAATACATCATGAGCACACAAACTCCATCTGCACCCTCGGCTCCTGTTGCAACTGCACTCTCGCCGGTTTTATGGCAGGTTAAACATTGCTTACAAATCTTCTTCGATTAA 1128 0.453 MATVATTGIGVGLTKLQPNKSLFLSHGFRIKPSSLLPCSSRKKPPFQVFALGGGVGVGSEWVLDSIHNLFVGVGVGLPCTVMECGDIIYRSTLPKSNGLTLTVPGVVLALGALSYLWATPGVAPGFFDMFVLAFVERLFRPTYRKDDFVLGKKLGEGSFGVVYRATLARPSSKEGDVVLKKATEYGAVEIWMNERVRRACANSCADFLYGFLESSSKKATEYWLIWRFEGDATLADLLQSRDFPYNVETLILGEVQDLPKGVERENRIIQTIMRQLLFALDSLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQVKHCLQIFFD 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91758g00004 375 Gene3D Transferase(Phosphotransferase) domain 1 256 369 - -
Stsc91758g00004 375 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 57 367 - -
Stsc91758g00004 375 SMART serkin_6 148 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91758g00004 375 ProSiteProfiles Protein kinase domain profile. 148 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91758g00004 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Stsc91758g00004 375 ProSitePatterns Protein kinases ATP-binding region signature. 154 180 IPR017441 GO:0005524
Stsc91758g00004 375 Pfam Protein kinase domain 149 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91758g00004 375 SUPERFAMILY Protein kinase-like (PK-like) 132 344 IPR011009 -
Stsc91758g00004 375 Gene3D Phosphorylase Kinase; domain 1 134 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91758g00004 Stsc-Chr91758 15240 17692 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91758g00004 220 339 MAP Kinase Kinase Kinase Kinase AT3G15220 33.333 7.39e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Stsc91758g00004 Pkinase 4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91758g00004 - - gmx:100810714 592.808