Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91758g00002 ATGGCAGGAACATCATGGTTGGTGGACAAAAGTAGAATTGCAACGAAAATAAAGTGTGCATCAGGAGCTTGTGATCCTAACCAAGTTGTTTGGAAAAGCAATCCTACCAAGGCTTGCCCGAATTGTCATCATGCTATTGACAATAGTGATGTAACTCAAGATTGGCCTGGCTTACCAAAAGGGGTTAAATTTGATCCGTCCGATCAAGAGATAATCTGGCATTTGCTTGCAAAGGCTGGTGTAGGAAATTTAAAACCTCATCCTTTCATTGATGAATTTATTACTACTCTTGAAGTCGATGATGGAATTTGTTATACTCATCCTCAACATTTACCTGGTGTCAAGCAAGATGGAAGAGCTTCACATTTCTTCCACAGAGCAATAAAGGCCTATAATACTGGCACCCGAAAGCGTAGAAAAGTGCATGGTCAGGATGATGTCCGCTGGCACAAGACTGGAAAGACTAAACCGGTCGTGCTGGATGGGGTTCAAAAGGGTTGCAAAAAAATCATGGTTCTGTATACAAATGCAGCGAGAGGAGGAAAGTCAGAGAAAACTAATTGGGTTATGCACCAATATCACCTAGGGACTGAAGAAGACGAAAAGGATGGAGAATATGTTATTTCTAAAGTGTTCTATAAAGAAGAGCAGGATATACTTAAATCCGAAGAAAACAAGAATGCAACAGTTGTGAATGTAGATCCAGTCACTCCCAAATCTGTGACTCCTGAACCTCCTTGTAGTGAAAGGCAAGATTCAGATCTAGACCTGGATCGAGACCTAGGGCAAGAAGGACTCACTTTTCCTGAGATGGATTGCTTAGATGAAATTCAAGCTGACTCTGAAGAGTTTGCAAAAGCTAAGCCATCGGTACTGGAGAAACAAGAAAATGAAGGGATGGACAATAAGGAAACTAATGCTCATGAAGCACAACCGTGGTGGGATAGTGATTCGCAGAATCTATTAGACTCACAACAACTTGTCGAAGCATTAACTCTCTGTGAAGATATCCTTCACAGCCAATCTTCCAACAAAGACGATGAAAATGATAAGAACCAAACTGGTCTATCTGTTTATGCTCGTCTCGGACCAGAGCATCTGAAGAAGGATATTGAGGAGTGTCAGAAGCTAGCCCTTGATGCAAAAAATGCAGGACCAGAGCATCAGAAGGATATTGAAGAGGGCCAAGATCTTGATCCTGACCTCGCAAATATAGAGCGTGATACTCCTCCTGAGCAACGACTGAGTCAGCTGGAATTTGGATCGCAAGATAGCTATCGTTCCTGGGGTTTTCAAGGCATAAACTAG 1308 0.422 MAGTSWLVDKSRIATKIKCASGACDPNQVVWKSNPTKACPNCHHAIDNSDVTQDWPGLPKGVKFDPSDQEIIWHLLAKAGVGNLKPHPFIDEFITTLEVDDGICYTHPQHLPGVKQDGRASHFFHRAIKAYNTGTRKRRKVHGQDDVRWHKTGKTKPVVLDGVQKGCKKIMVLYTNAARGGKSEKTNWVMHQYHLGTEEDEKDGEYVISKVFYKEEQDILKSEENKNATVVNVDPVTPKSVTPEPPCSERQDSDLDLDRDLGQEGLTFPEMDCLDEIQADSEEFAKAKPSVLEKQENEGMDNKETNAHEAQPWWDSDSQNLLDSQQLVEALTLCEDILHSQSSNKDDENDKNQTGLSVYARLGPEHLKKDIEECQKLALDAKNAGPEHQKDIEEGQDLDPDLANIERDTPPEQRLSQLEFGSQDSYRSWGFQGIN 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91758g00002 435 MobiDBLite consensus disorder prediction 380 408 - -
Stsc91758g00002 435 Gene3D NAC domain 67 219 IPR036093 GO:0003677|GO:0006355
Stsc91758g00002 435 FunFam NAC domain-containing protein 8 67 218 - -
Stsc91758g00002 435 ProSiteProfiles NAC domain profile. 58 214 IPR003441 GO:0003677|GO:0006355
Stsc91758g00002 435 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 4 375 IPR044799 GO:0003700
Stsc91758g00002 435 MobiDBLite consensus disorder prediction 380 420 - -
Stsc91758g00002 435 MobiDBLite consensus disorder prediction 232 255 - -
Stsc91758g00002 435 SUPERFAMILY NAC domain 43 214 IPR036093 GO:0003677|GO:0006355
Stsc91758g00002 435 Pfam No apical meristem (NAM) protein 59 195 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91758g00002 Stsc-Chr91758 8917 12722 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91758g00002 14 234 NAC Transcription Factor Family AT1G28470 52.586 1.13e-75 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc91758g00002 NAM 8.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91758g00002 - - adu:107491284 783.097