Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91729g00002 ATGGTAAGGCAGAAGATAAAGATAAAGAAGATAGACAACATAACAGCGAGACAAGTCACGTTCTCAAAGAGGAGAAGAGGGATCTTCAAGAAAGCACAAGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCTGCCACTGGGAGGCTTTTTGAATATGCTAGCTCCAGTATGAAGGACATAACTGCAAGGTATGCCCAGCATACACATGAGATAAGTAGATCAACAGACAGACCCCTAGAACTGCAGATGAAAGGTGAAGATTTTCAGGGACTGAGCCTAGAAGAACTACTCCAACTTGAGAAAGCACTTCAAACAGGACTAAATCGGGTGATTGAGACAAAGGAAAAGCTTATCATGGATGACATTGCAGCACTTCAGAAAAAGAGCGCCGAATTAGAACAAGAGAACAAGCAGTTAAAGCAAAAGATGGAGATGGTGAAAGTTCAGAAAAGTGTAACAGTGATGGATTCATCGGATATTGGAATGCAAGAAGTAGTGTCATCGGAGTCATTAAATAATGCATGCAGCTGCATCAGTAGTGGAGCTCCTTCTTCTCTTGAAGATGATTCCTCTGATACATCTCTTAAGTTAGGGTAA 612 0.4134 MVRQKIKIKKIDNITARQVTFSKRRRGIFKKAQELSVLCDAEVALIIFSATGRLFEYASSSMKDITARYAQHTHEISRSTDRPLELQMKGEDFQGLSLEELLQLEKALQTGLNRVIETKEKLIMDDIAALQKKSAELEQENKQLKQKMEMVKVQKSVTVMDSSDIGMQEVVSSESLNNACSCISSGAPSSLEDDSSDTSLKLG 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91729g00002 203 Coils Coil 120 154 - -
Stsc91729g00002 203 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Stsc91729g00002 203 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc91729g00002 203 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc91729g00002 203 MobiDBLite consensus disorder prediction 182 203 - -
Stsc91729g00002 203 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Stsc91729g00002 203 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc91729g00002 203 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 146 - -
Stsc91729g00002 203 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc91729g00002 203 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc91729g00002 203 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc91729g00002 203 CDD MADS_MEF2_like 12 74 IPR033896 GO:0000977|GO:0045944
Stsc91729g00002 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc91729g00002 203 Pfam K-box region 87 148 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc91729g00002 203 ProSiteProfiles K-box domain profile. 59 154 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc91729g00002 203 FunFam Transcription factor, MADS-box 13 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91729g00002 Stsc-Chr91729 3397 19012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91729g00002 1 203 MADS-box Gene Family AT4G24540 50.885 6.37e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc91729g00002 K-box 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91729g00002 - - adu:107459373 303.523