Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91729g00001 ATGGTAAGGCAGAAGATAAAGATAAAGAAGATAGACAACATAACAGCGAGACAAGTCACGTTCTCAAAGAGGAGAAGAGGGATCTTCAAGAAAGCACAAGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCTGCCACTGGGAGGCTTTTTGAATATGCTAGCTCCAGTATGAAGGACATAACTGCAAGGTATGCCCAGCATACACATGAGATAAGTAGATCAACAGACAGACCCCTAGAACTGCAGATGAAAGGTGAAGATTTTCAGGGACTGAGCCTAGAAGAACTACTCCAACTTGAGAAAGCACTTCAAACAGGACTAAATCGGGTGATTGAGACAAAGGAAAAGCTTATCATGGATGACATTGCAGCACTTCAGAAAAAGAGCGCCGAATTAGAACAAGAGAACAAGCAGTTAAAGCAAAAGATGGAGATGGTGAAAGTTCAGAAAAGTGTAACAGTGATGGATTCATCGGATATTGGAATGCAAGAAGTAGTGTCATCGGAGTCATTAAATAATGCATGCAGCTGCATCAGTAGTGGAGCTCCTTCTTCTCTTGAAGATGATTCCTCTGATACATCTCTTAAGTTAGGGTTGCCCTTCCGTAATTGA 627 0.4163 MVRQKIKIKKIDNITARQVTFSKRRRGIFKKAQELSVLCDAEVALIIFSATGRLFEYASSSMKDITARYAQHTHEISRSTDRPLELQMKGEDFQGLSLEELLQLEKALQTGLNRVIETKEKLIMDDIAALQKKSAELEQENKQLKQKMEMVKVQKSVTVMDSSDIGMQEVVSSESLNNACSCISSGAPSSLEDDSSDTSLKLGLPFRN 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91729g00001 208 Coils Coil 120 154 - -
Stsc91729g00001 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc91729g00001 208 Pfam K-box region 87 148 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc91729g00001 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc91729g00001 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc91729g00001 208 MobiDBLite consensus disorder prediction 186 208 - -
Stsc91729g00001 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc91729g00001 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc91729g00001 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc91729g00001 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc91729g00001 208 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Stsc91729g00001 208 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Stsc91729g00001 208 CDD MADS_MEF2_like 12 74 IPR033896 GO:0000977|GO:0045944
Stsc91729g00001 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 146 - -
Stsc91729g00001 208 FunFam Transcription factor, MADS-box 13 83 - -
Stsc91729g00001 208 ProSiteProfiles K-box domain profile. 59 154 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91729g00001 Stsc-Chr91729 1744 19065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91729g00001 1 205 MADS-box Gene Family AT4G24540 51.316 1.14e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc91729g00001 K-box 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91729g00001 - - adu:107459373 311.612