Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91717g00003 ATGGATTGTTTTGTAGAAACTATATTATTTAGAATGAGAAGAATGAATAATGAGAATGAAGATGAGGTGCTTGCCAATGATCAGTCAGGGTTACAGTTGCATGATGAGAGTAAGGAAGGACATGGCGGTGTTGTTCTGAAAAAAGGCCCGTGGACAACTTCTGAAGATGCTATGTTGGTTGATTATGTTAATAAGCATGGGGAGGGAAACTGGAATGCTGTTCAGAAGTACTCAGGTCTATTACGCTGTGGAAAAAGTTGCCGATTGCGTTGGGCTAATCATCTAAGACCAAATTTAAAGAAAGGAGCATTTACTGCAGAAGAGGAGAGGTTGATAGCTGAGCTTCATGCTAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCTGGTCGCACAGATAATGAAATAAAGAACTACTGGAACACCCGTATCAAGAGGCGTCAACGTGCTGGCTTGCCACTGTATCCTCCTGAAGTGTGCGTGCAAGCAATGCAAGAGAATCAACATGGCCGAAGCTCTGGTGGTATTAATGGTGGCAATAAAGTGCATCATGATTTTGTTCACAAAAGTTATGAGATACACAGTGCAATATTTGACGGTTGGAATGGTAGTCAGGGAATCCTACCATATGCACCTGAGCTTCCCGATATTTCTGCTTACACCAGTATGATGAAAGGTTTTGATTCTTCCCACTATTGTAATTTTGAACAATTAACATCACCTAACCACAAGCGTCTCCGAGAGTCTACAACACCTTTTATTGGATCTGGTGTTATGAGCACAAATTGGTTTTATCCATTTGATCAAATTCGGGATAACACGGCTGATAAGATTGCACAATCATTTGGCATGCAATCTCCCTTTGATCTTGGACCCTCCCCACACAGCTCAATTTGTTACAGTCATTCACTTCCGAATGGCAATTCCTCTACTTCTAAGCCAACTTATGAGGCTGTGAAGTTTGAGCTCCCTTCACTCCAATATCCAGAAACTGATGTAGGTAGCTGGAGTACATCTCCACCACCTCCTTTGCTTGAGTCAGTTGATGATTTCATTCAATCTCCGATGCCACTTAGTGCACTGGACTCAGATTGTTCTTCCCCACAAAATAGTGGCTTGCTGGATGCTTTGCTTTATCAAGCAAGGACACTGAGCAGTTCAAAGAACCATTGTTCTGACAAGAGTTCAAATTCATGTGCTGCAACTCCTTGTGACAGAGCACTCAGTTCCACTTTGAACAAGTATGAGACAGACTGGGAAGACTACACTGACACTGTATCGCCATTTGGGGCAACATCAATGTTGAACGAGTATCCTGCTGCTAGTGCCAGTGCAAATTCATTGGATGAACGCCCAACAGTTAATTCGTTTAATGACAAGATTGTGAAAACAGAGAATGTTGATCAGGTTTGGTCCCCAAACAGTGAAAATCAAGGCATGTTTGCGATCAAAATTACTCGACCAGATGTTTTGCTTGCTTCAGATTGGCTTCAGCAGAGTTCAGAGTGCGACACGAAGCAAGGCAGCATGGCTGATGATATATCTGCTCTTTGCGGAGATGATTTAGCCACTGACTACAAGCATACAAGCACCGGAACTTCTCGGTTGAGTCAGGTATGGGGCCTTGGTTCTTGCGCAAGGAACATCATGCCTGCTCTCTGTGAAGATTCTGATCGTGATTAA 1689 0.4316 MDCFVETILFRMRRMNNENEDEVLANDQSGLQLHDESKEGHGGVVLKKGPWTTSEDAMLVDYVNKHGEGNWNAVQKYSGLLRCGKSCRLRWANHLRPNLKKGAFTAEEERLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCVQAMQENQHGRSSGGINGGNKVHHDFVHKSYEIHSAIFDGWNGSQGILPYAPELPDISAYTSMMKGFDSSHYCNFEQLTSPNHKRLRESTTPFIGSGVMSTNWFYPFDQIRDNTADKIAQSFGMQSPFDLGPSPHSSICYSHSLPNGNSSTSKPTYEAVKFELPSLQYPETDVGSWSTSPPPPLLESVDDFIQSPMPLSALDSDCSSPQNSGLLDALLYQARTLSSSKNHCSDKSSNSCAATPCDRALSSTLNKYETDWEDYTDTVSPFGATSMLNEYPAASASANSLDERPTVNSFNDKIVKTENVDQVWSPNSENQGMFAIKITRPDVLLASDWLQQSSECDTKQGSMADDISALCGDDLATDYKHTSTGTSRLSQVWGLGSCARNIMPALCEDSDRD 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91717g00003 562 ProSiteProfiles Myb-like domain profile. 96 146 IPR001005 -
Stsc91717g00003 562 Pfam Myb-like DNA-binding domain 101 144 IPR001005 -
Stsc91717g00003 562 Pfam Myb-like DNA-binding domain 48 95 IPR001005 -
Stsc91717g00003 562 CDD SANT 103 144 IPR001005 -
Stsc91717g00003 562 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 95 IPR017930 -
Stsc91717g00003 562 Gene3D - 103 149 - -
Stsc91717g00003 562 Gene3D - 47 100 - -
Stsc91717g00003 562 SMART sant 47 97 IPR001005 -
Stsc91717g00003 562 SMART sant 100 148 IPR001005 -
Stsc91717g00003 562 CDD SANT 50 95 IPR001005 -
Stsc91717g00003 562 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 150 IPR017930 -
Stsc91717g00003 562 SUPERFAMILY Homeodomain-like 47 142 IPR009057 -
Stsc91717g00003 562 ProSiteProfiles Myb-like domain profile. 46 95 IPR001005 -
Stsc91717g00003 562 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 16 518 - -
Stsc91717g00003 562 FunFam MYB-related transcription factor 47 100 - -
Stsc91717g00003 562 FunFam Transcription factor MYB97 103 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91717g00003 Stsc-Chr91717 8905 13605 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91717g00003 43 557 MYB Transcription Factor Family AT5G06100 42.857 1.75e-123 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc91717g00003 Myb_DNA-binding 4.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91717g00003 K09422 - gmx:100810415 744.962