Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91716g00004 ATGGAGCTTGGTGGTGGCGGCGGCGGTGACGGTAGCGGTAGTCATCATATTGATCAAGGATCTTCATCTCATCATCAGAATCAGAAGAGAATGGGAAGAGGGAAGATCGAGATAAAGCGAATCGAGAACACGACGAATCGCCAAGTGACGTTCTGCAAGCGCCGTAACGGATTGCTTAAGAAAGCCTATGAACTCTCCGTGCTGTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCCAGCCGTGGCCGTTTGTATGAGTATGCAAACAACAG 272 0.4926 MELGGGGGGDGSGSHHIDQGSSSHHQNQKRMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANN 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91716g00004 90 SMART madsneu2 31 90 IPR002100 GO:0003677|GO:0046983
Stsc91716g00004 90 FunFam MADS-box transcription factor 21 43 90 - -
Stsc91716g00004 90 Gene3D - 43 90 IPR036879 GO:0003677|GO:0046983
Stsc91716g00004 90 ProSiteProfiles MADS-box domain profile. 31 90 IPR002100 GO:0003677|GO:0046983
Stsc91716g00004 90 SUPERFAMILY SRF-like 31 89 IPR036879 GO:0003677|GO:0046983
Stsc91716g00004 90 ProSitePatterns MADS-box domain signature. 33 87 IPR002100 GO:0003677|GO:0046983
Stsc91716g00004 90 PRINTS MADS domain signature 33 53 IPR002100 GO:0003677|GO:0046983
Stsc91716g00004 90 PRINTS MADS domain signature 53 68 IPR002100 GO:0003677|GO:0046983
Stsc91716g00004 90 PRINTS MADS domain signature 68 89 IPR002100 GO:0003677|GO:0046983
Stsc91716g00004 90 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 87 IPR002100 GO:0003677|GO:0046983
Stsc91716g00004 90 PANTHER SERUM RESPONSE FACTOR HOMOLOG 31 89 - -
Stsc91716g00004 90 CDD MADS_MEF2_like 32 90 IPR033896 GO:0000977|GO:0045944
Stsc91716g00004 90 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91716g00004 Stsc-Chr91716 17982 18253 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91716g00004 17 90 MADS-box Gene Family AT3G58780 82.667 3.11e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc91716g00004 SRF-TF 2.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91716g00004 K09264 - qsa:O6P43_021099 131.724