Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91716g00003 ATGGATGACTCTGTGATTGAAATTTTGTGGTGCCCTCTGATAAGCGTAAACCCTAATAAAATGAAGCTATGGATGATGAAGAAGAAGAAGAAAGCATCAAAAGAAAAGAAAAGAAAAGAAAAAGAAGATAATAGCAGCTCCGCTTCTCTCTTTAAGTTAAAAGTTGAAACGCAGCGTTTCAGAGAAAAAAAAAAACCAGTTTGCATCAAACCGGATAACCAGTTGACCACTAGCGGTTCGTCCGAGTCATCGTCGCCGGCATCGTTGCTCCGTTCTCCACCTATCTCCGCCGTGATTGCTACCCTGCCTCGTCGCTGTCGCAACCTTACTATCTTCAGTGAAGTATTCAGCTGTCAAAGAATTTTGGAGATGGCTGCAAGATTCGCTTCCAGATGCTCTCGTGTCAGCCGTTCTCTGTTCAGTGGATTAAGCAACAACTCCCCTGGTTTATTTACCACATCACATGAGATGACATGCAGCAATTCCTTTTCTCAGCTGCAGCAACAGCGCACCTTCATACAAATGAGGACCGTTCTCAAGGTTGCAGACAATTCTGGGGCTAAAAAGGTCATGTGTATACAGGCTCTGAAAGGTAAGAAAGGGGCAAGATTAGGCGACACAATAGTAGCATCCGTGAAGGAAGCACATCCTAACGGAAAAGTGAAGAAAGGAAAAGTAGTATATGGTGTGGTTGTGCGTGCGGCAATGCAAAGGGGCAGATGCGACGGCAGTGAGGTCAAGTTTGATGACAATGCCGTGGTGCTTGTCGACAAGCAAGGCCAGCCAATTGGGACCAGAGTTTTTGGACCTGTCCCTCATGAGCTGAGGCAGAAGAAGCATGTCAAGATTCTTACCTTGGCAGGACATATTGCTTAA 876 0.4555 MDDSVIEILWCPLISVNPNKMKLWMMKKKKKASKEKKRKEKEDNSSSASLFKLKVETQRFREKKKPVCIKPDNQLTTSGSSESSSPASLLRSPPISAVIATLPRRCRNLTIFSEVFSCQRILEMAARFASRCSRVSRSLFSGLSNNSPGLFTTSHEMTCSNSFSQLQQQRTFIQMRTVLKVADNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91716g00003 291 Gene3D Ribosomal protein L14 172 291 IPR036853 GO:0003735|GO:0005840|GO:0006412
Stsc91716g00003 291 Pfam Ribosomal protein L14p/L23e 173 290 IPR000218 GO:0003735|GO:0005840|GO:0006412
Stsc91716g00003 291 ProSitePatterns Ribosomal protein L14 signature. 229 255 IPR019972 -
Stsc91716g00003 291 MobiDBLite consensus disorder prediction 29 48 - -
Stsc91716g00003 291 MobiDBLite consensus disorder prediction 71 90 - -
Stsc91716g00003 291 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 173 290 IPR000218 GO:0003735|GO:0005840|GO:0006412
Stsc91716g00003 291 NCBIfam 50S ribosomal protein L14 173 290 IPR005745 GO:0003735|GO:0006412|GO:0015934
Stsc91716g00003 291 SUPERFAMILY Ribosomal protein L14 173 290 IPR036853 GO:0003735|GO:0005840|GO:0006412
Stsc91716g00003 291 Hamap 50S ribosomal protein L14 [rplN]. 172 291 IPR000218 GO:0003735|GO:0005840|GO:0006412
Stsc91716g00003 291 SMART Ribosomal_L14_2 172 291 IPR000218 GO:0003735|GO:0005840|GO:0006412
Stsc91716g00003 291 MobiDBLite consensus disorder prediction 70 90 - -
Stsc91716g00003 291 FunFam 50S ribosomal protein HLP, mitochondrial-like 172 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91716g00003 Stsc-Chr91716 7162 9455 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91716g00003 182 274 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 37.000 3.71e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91716g00003 K02874 - gmx:100818301 289.271