Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91715g00002 ATGGCGCTATGGATGGAAAAGGGTTCAGAGCCACTCACAGAAGCCGAAAAGGCAGACCTTGAAGCCATTGCTGCCATCAAAGAATCTGCAGCCATTGAACTCAAGGAAAAGGGTAACGCGTTTGTGAAGAAGGGTAAGAAGCATTACTCTGAAGCAATTGATTGCTACACAAGGGCAATCAATCAGAAAGCATTGAATGATTCTGAGAGTTCTCTTCTTTTTTCCAACAGAGCTCATGTCAATTTGCTTCTTGGCAACCATAGGCGTGCCCTTGATGATGCTCAACAAGCTCTCAATTTGTCCCCTTCCAACATAAAGGCAATTTATAGAGCTGTCAAGGCATCTCTATCACTGAATTTATTGGCCGAAGCACAAGACTATTGCCGAAAGGGTCTTCAGTTGGACCCAAATAACGAGGAACTTAAGAGGCTTGACCAACAGATTCATACGAAGATATCTGAGAATGAGAAGCGTGATGCTGAAGTCTCCAAAGCCATAAAGGAGGCAGAAGAACTTGTGTCTGCAATAGAAAATAGAGGCTTGAAGGTTGGAAAGGCAATGTATCAGGAACTCACCGGGTTAAAGAAACCCGTGTTAGACAAAAATAATATCCTTCATTGGCCTGTCCTTCTTCTCTACGCAGAGGTTATGTCCAGTGATTTCATTGAGGATTTCTGTGAGACTGACATGTTTTCACCTTCAAACATGTTTTCAGCAGACCAACCACTCCCATGGGATGATGAAAACAATTACAAACGTGAATTTGTTGAATTATACTATGAGGCCGTCTCTGGAGTTCGTCTATCAAAGGAGAAACTTCTTCATTGTTTATTACAGGGAACTGTAGCTTCACATGTTGGTGATGAAGAGAAAGATGCAGTTGAGGATTTTAAACCCAGTGCAGGCTCCCCGAAATGGATCAAAGTAAACGAAAAGAAAACACTCCACGATATCCTCAAAGAGCCTAATTTCATAATCCCCGGAATCCCAGTTTTCTATGTTGTTTCCAAGCAATCCAACTTTTATAGCAAGTTCAAATCTGGAAAATGGGCTCCTCCAAGCATATGA 1068 0.4204 MALWMEKGSEPLTEAEKADLEAIAAIKESAAIELKEKGNAFVKKGKKHYSEAIDCYTRAINQKALNDSESSLLFSNRAHVNLLLGNHRRALDDAQQALNLSPSNIKAIYRAVKASLSLNLLAEAQDYCRKGLQLDPNNEELKRLDQQIHTKISENEKRDAEVSKAIKEAEELVSAIENRGLKVGKAMYQELTGLKKPVLDKNNILHWPVLLLYAEVMSSDFIEDFCETDMFSPSNMFSADQPLPWDDENNYKREFVELYYEAVSGVRLSKEKLLHCLLQGTVASHVGDEEKDAVEDFKPSAGSPKWIKVNEKKTLHDILKEPNFIIPGIPVFYVVSKQSNFYSKFKSGKWAPPSI 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91715g00002 355 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 14 352 - -
Stsc91715g00002 355 Pfam Cns1/TTC4 Wheel domain 200 265 IPR044059 GO:0051879
Stsc91715g00002 355 CDD CTWD_Cns1-like 170 347 - -
Stsc91715g00002 355 SUPERFAMILY TPR-like 22 159 IPR011990 GO:0005515
Stsc91715g00002 355 Pfam Tetratricopeptide repeat 106 138 IPR019734 GO:0005515
Stsc91715g00002 355 Gene3D Tetratricopeptide repeat domain 24 183 IPR011990 GO:0005515
Stsc91715g00002 355 ProSiteProfiles TPR repeat profile. 71 104 IPR019734 GO:0005515
Stsc91715g00002 355 SMART tpr_5 105 138 IPR019734 GO:0005515
Stsc91715g00002 355 SMART tpr_5 31 66 IPR019734 GO:0005515
Stsc91715g00002 355 SMART tpr_5 71 104 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91715g00002 Stsc-Chr91715 11617 15841 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91715g00002 30 160 Calmodulin-binding Proteins AT3G25230 30.282 2.95e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91715g00002 K24927 - gmx:100783179 561.222