Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91704g00002 ATGAACTTGTCAAACAACAATATGACAGGTCATATACCTGAAGAACTTGCTAGTATCCCTGTTCTTAGTGTTATAGACCTGTCAAATAATAAGCTCAATGGCCCCATACCTGAAAAGTTTGGTAGTTCTTCAAGTTTACAACTTCTCAATGTGTCCTTCAACAACATCACGGGTTCAATTCCAGCAGGGAAGTCATTCAAATTGATGGGTAGCAGTGCATTTGTTGGGAACTCTGAGCTGTGTGGAGCACCTCTTAGACCATGTCCTGATTCGGTTGGAATATTGGGGAGCAAAGGCACATGGAGGCTTACCCGTATTCTGCTACTCTGTTTAGGGTTGTTAGTAATCCTTCTAGGAGTCGGATTTGGAATACTTTATTTAAGAAGAGGGATCAGAAGTCAATGGAAGATGGTCTCATTTGCTGGACTCCCACAATTCACAGCAAATGATGTTTTGACAAGCTTCAGTGACACAAAAACAACAGCAGAAGTTCCATCCCCATCACCACCTTTGGTTTCGAAGGCAGTGCTCCCTACAGGGATAACAGTCATAGTTAATAAGATTGAATGGGAACAGAGGAGCATCAAGGTCATGTCAGAATTCATAATTCGCCTCGGAAATGCGAGGCACAAGAACTTGATCAGATTATTAGGGTTATGCCACAACAATCAGTTAGTCTATCTTCTGTATGATTATGTGCCCAATGGGAATTTGGCTGAAAGAATTGGAAGGAAATGGGACTGGGCAGCTAAGTTCAGAACTGTGGTTGGCATCGCAAGGGGGCTAAGATTCCTTCACCATGACTGTTACCCAGCCATACCCCATGGAGACTTGAGATCAAGCAACGTTGTGTTTGATGAAAATATGGAACCCCGTCTGGCTGAATTTGGGTTCAAACATCTGTTAAAGTTGACCAAAGGTTCATCTCCTGCCACAACCAAGTGGGAAACAGGATACAATGAAGCCTTCAAAGAAGAACTCACAATGGATATCTACAAATTCGGAGAGATGATTCTGGAAATTTTAACTGGAGGAAGGTTGACTAATGCAGCAGCTACCATACAAAGCAAACCAAGGAATGTTCTTCTCAGAGAAATTTATGACCAGAACGAAGTCTGTTCTCCCAGTTCAATGCAGGAGATCAAACTGGTTCTCGAGGTTGCTATGCTTTGCACAAGCAGCAGGTCAAACGATCAACCATCCATGGAAGATGCTCTGAAGCTTTTGTCAGGGATCAAACCTATAGGAGATGGCAGAGCTTCAAAAGAAGGATAG 1275 0.429 MNLSNNNMTGHIPEELASIPVLSVIDLSNNKLNGPIPEKFGSSSSLQLLNVSFNNITGSIPAGKSFKLMGSSAFVGNSELCGAPLRPCPDSVGILGSKGTWRLTRILLLCLGLLVILLGVGFGILYLRRGIRSQWKMVSFAGLPQFTANDVLTSFSDTKTTAEVPSPSPPLVSKAVLPTGITVIVNKIEWEQRSIKVMSEFIIRLGNARHKNLIRLLGLCHNNQLVYLLYDYVPNGNLAERIGRKWDWAAKFRTVVGIARGLRFLHHDCYPAIPHGDLRSSNVVFDENMEPRLAEFGFKHLLKLTKGSSPATTKWETGYNEAFKEELTMDIYKFGEMILEILTGGRLTNAAATIQSKPRNVLLREIYDQNEVCSPSSMQEIKLVLEVAMLCTSSRSNDQPSMEDALKLLSGIKPIGDGRASKEG 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91704g00002 424 SUPERFAMILY Protein kinase-like (PK-like) 142 409 IPR011009 -
Stsc91704g00002 424 FunFam Leucine-rich repeat receptor-like protein kinase 1 90 - -
Stsc91704g00002 424 FunFam Leucine-rich repeat receptor-like protein kinase TDR 146 232 - -
Stsc91704g00002 424 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 411 - -
Stsc91704g00002 424 SUPERFAMILY L domain-like 2 87 - -
Stsc91704g00002 424 ProSitePatterns Tyrosine protein kinases specific active-site signature. 273 285 IPR008266 GO:0004672|GO:0006468
Stsc91704g00002 424 Pfam Protein tyrosine and serine/threonine kinase 185 406 IPR001245 GO:0004672|GO:0006468
Stsc91704g00002 424 Gene3D Phosphorylase Kinase; domain 1 146 232 - -
Stsc91704g00002 424 ProSiteProfiles Protein kinase domain profile. 111 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91704g00002 424 Gene3D Transferase(Phosphotransferase) domain 1 233 418 - -
Stsc91704g00002 424 FunFam Leucine-rich repeat receptor-like protein kinase TDR 233 417 - -
Stsc91704g00002 424 Gene3D Ribonuclease Inhibitor 1 92 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91704g00002 Stsc-Chr91704 2911 4897 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91704g00002 1 63 Receptor kinase-like Gene Family AT5G51350 38.095 8.26e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc91704g00002 PK_Tyr_Ser-Thr 1.9e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91704g00002 - - aprc:113852384 676.396