Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91655g00001 ATGGATGATTTTTCTAATAACAATAATAATAATAATACTTCTGAAGACACCAACAAGATTTGTCCCCGCGGTCACTGGCGACCCGCCGAGGATGAAAAGCTTCGGCAACTTGTCGAACAATACGGTGCTCAGAACTGGAATTCCATTGCTGAAAAACTTCAAGGAAGATCAGGAAAAAGCTGTAGATTGAGATGGTTTAATCAGTTAGATCCAAGAATCAACAGAAGGCCGTTCACGGAGGAGGAAGAAGAGCGGTTACTGGCGGCGCACCGCATTCACGGCAACAAATGGGCGCTCATAGCGAGGCTGTTTCCGGGAAGAACAGACAACGCCGTGAAGAATCACTGGCACGTGATAATGGCAAGAAAGCAAAGAGAGCAATCCAAGCTCTGTGGCAAAAGAACCTTCCATGACATGATTTTCAGTAACAACAACAACGATTCAACTTCTTCTTCGTCTAATAATTCCAATAACTTCATCAAGAGACCCAGACTAATCGGGTTAGAACATTCCAGATTCTTCGACTTTCGCAAAGATAGTAGTAATAGGATCATAGTTGCAGCAGATACTTCTAGTACTCCTTCTACTACTTCTTGGAATTTTGCATCTAATGGGGGAGGAGGAGGAGGAAAAGACTACTTCACCATCAACGGTTCTAATATTTATCTTCAAGAAGGTTCTAGAACCTCCGATATATTCCATTACAGAGTTTTTCCGGCTCCTACTTCTACTGATGCTACTACTGCACCATTTACCTCTAATGGATTCTCTTCGTCGCTCCAGAACTACAAGAGGATCGTTCCGAATCCCTTCGCCTTCCTCGCCTCTTCGGATACTAATGGGAGGATAAAGCAGCCGGACTTGAAGTTGAAGGAAAAAGAAGAAGACGACGACGAGGATGATCGCCCTAAAAAAGAAGTTCCCTTCATTGATTTTTTGGGGGTGGGTGTCTCTTCTTCTTGA 963 0.4372 MDDFSNNNNNNNTSEDTNKICPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRTFHDMIFSNNNNDSTSSSSNNSNNFIKRPRLIGLEHSRFFDFRKDSSNRIIVAADTSSTPSTTSWNFASNGGGGGGKDYFTINGSNIYLQEGSRTSDIFHYRVFPAPTSTDATTAPFTSNGFSSSLQNYKRIVPNPFAFLASSDTNGRIKQPDLKLKEKEEDDDEDDRPKKEVPFIDFLGVGVSSS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91655g00001 320 CDD SANT 86 117 IPR001005 -
Stsc91655g00001 320 CDD SANT 26 67 IPR001005 -
Stsc91655g00001 320 SUPERFAMILY Homeodomain-like 22 116 IPR009057 -
Stsc91655g00001 320 Gene3D - 23 74 - -
Stsc91655g00001 320 FunFam MYB transcription factor 23 74 - -
Stsc91655g00001 320 SMART sant 22 71 IPR001005 -
Stsc91655g00001 320 SMART sant 74 122 IPR001005 -
Stsc91655g00001 320 Gene3D - 77 138 - -
Stsc91655g00001 320 MobiDBLite consensus disorder prediction 1 19 - -
Stsc91655g00001 320 FunFam MYB transcription factor 76 150 - -
Stsc91655g00001 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Stsc91655g00001 320 PANTHER MYB PROTEIN-RELATED 23 155 - -
Stsc91655g00001 320 MobiDBLite consensus disorder prediction 1 24 - -
Stsc91655g00001 320 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Stsc91655g00001 320 MobiDBLite consensus disorder prediction 277 306 - -
Stsc91655g00001 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 69 IPR017930 -
Stsc91655g00001 320 ProSiteProfiles Myb-like domain profile. 23 69 IPR001005 -
Stsc91655g00001 320 Pfam Myb-like DNA-binding domain 26 86 - -
Stsc91655g00001 320 MobiDBLite consensus disorder prediction 284 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91655g00001 Stsc-Chr91655 648 2210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91655g00001 20 138 MYB Transcription Factor Family AT1G17950 79.832 3.89e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc91655g00001 Myb_DNA-bind_6 2.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91655g00001 K09422 - gmx:100817328 303.908