Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91651g00001 ATGGGAAGGTGTCTACGCTGCGAAGATGGGAGTAGCGTCAAGAAAGGACCATGGACTCCTGAAGAAGATCAAAAGCTTCTTTGCTACATTCAGAAACATGGCCGGGGAAGTTGGAGAGCAATTCCTAAGCTAGCCGGTCTTAATAGATGTGGTAAGAGCTGTAGGCTTAGGTGGACCAACTATTTGAGGCCTGGTATCAAGAGGGGTGAATTCTCCCAAGAAGAAGAACAAACCATTATACATCTTCATTCCATTCTTGGAAACAAATGGACAACAATTGCATCCCATCTTCCAGGGAGGACTGATAATGACATAAAGAATTTCTGGAACACTCGTGCGAAGAAGAAGCTGATTCAGATGGGTCTTGATCCAGTGACTCATAAGCCACTGATGAGGGATCATCGTTCAACAGTTGAACGGGCTGTGAAATTACATTCAGAATTAGAAGCTCATCTGGCAAAGCTTCAATACCTTAAAACCCAATATTTATCTACTTTATCCTCATCGCATGATGAATACTTAAATGACAGCATCGTCACAAATATGAAACCTTTGTTGAACTCCATCTCTAATGAGAACCACAAACTAGTTACAAACTTACCACAACAGCTGGACAATAATAATCATAATCATAATAATCCATCAGTAGCCGCATTTTCTGATGGGATTATTGATGATAGCTTCCAAACACTAGACCTTCCAGATATGCTATCTCACTTTTTTGACTTACCACAAGAAGGTGAAGGTGGTACTACTAATAATAATGATGACTCCTCGTGGATTATTCCACCTCCTTCTCCATCTATTGCTACAGATGATGTTAATTGA 828 0.4046 MGRCLRCEDGSSVKKGPWTPEEDQKLLCYIQKHGRGSWRAIPKLAGLNRCGKSCRLRWTNYLRPGIKRGEFSQEEEQTIIHLHSILGNKWTTIASHLPGRTDNDIKNFWNTRAKKKLIQMGLDPVTHKPLMRDHRSTVERAVKLHSELEAHLAKLQYLKTQYLSTLSSSHDEYLNDSIVTNMKPLLNSISNENHKLVTNLPQQLDNNNHNHNNPSVAAFSDGIIDDSFQTLDLPDMLSHFFDLPQEGEGGTTNNNDDSSWIIPPPSPSIATDDVN 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91651g00001 275 CDD SANT 70 111 IPR001005 -
Stsc91651g00001 275 Gene3D - 70 117 - -
Stsc91651g00001 275 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 202 - -
Stsc91651g00001 275 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Stsc91651g00001 275 FunFam MYB-related transcription factor 14 67 - -
Stsc91651g00001 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Stsc91651g00001 275 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Stsc91651g00001 275 MobiDBLite consensus disorder prediction 247 265 - -
Stsc91651g00001 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Stsc91651g00001 275 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc91651g00001 275 SMART sant 14 64 IPR001005 -
Stsc91651g00001 275 SMART sant 67 115 IPR001005 -
Stsc91651g00001 275 Gene3D - 12 68 - -
Stsc91651g00001 275 FunFam MYB transcription factor 69 130 - -
Stsc91651g00001 275 CDD SANT 17 62 IPR001005 -
Stsc91651g00001 275 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Stsc91651g00001 275 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Stsc91651g00001 275 MobiDBLite consensus disorder prediction 242 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91651g00001 Stsc-Chr91651 7663 8901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91651g00001 1 167 MYB Transcription Factor Family AT1G34670 62.431 1.31e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc91651g00001 Myb_DNA-binding 3.8e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91651g00001 K09422 - gmx:100811162 263.077