Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91648g00003 ATGGCTTCCTCCAGCTACCCACCGGACAAGCATTCTCCTCCAATTGTGATCCGTTTCTTTACAATTATTCACAATGAAAGTCTTCAACTTGAAAACCTTAAGATACCAAACAAATTCACTAGCAAATATGGTGATGGAGTGCCAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTCAATGGAAAATAGAATGGACTAAGCATGATGATGGTGAGATTTTCTTTGAAAATGGTTGGAAAGAGTTTGCTGCATATTACTCTCTGAATCATGGACACTTGGTGAGGTTTGATTACAACAGAACTTGTTTTCAGATACACATATTTAACATGAGTGGCTTGGAAATAGACTATCCTTCCAATGATCAGACTTGTGATGATGATTCTGTTGAGATTTTGGATGAGATACCGGCGTCGTTCCGGGGCCAGTCCACGATGACACTGGAATCATCTCCTTCTAGAATGAGTGCCACAGAAACAGAAACTATGAATGTTGAAGAGTCAAATCTTGAAATGCCAGTAATTGCATCTACCAATAAAAAATTGGATGTTTTCGATCCTGGGACCAGTGGGTTTCGGGCTCTTGAAGAAGCTCAGAAGTTCAGTTCAGAATATCCCTCTTTCATTGTCAAAATAAGGAGAGCTAATTTGTGGAGGTCAAGGGCGAATTTCGAAGCTGCCTTGTTCAGACGTTATTTCAAAAAGAAGGAATATGATGTAAACATAAGGTTTGAGGGGAACTTATTGCCTGCAAAGTTGCGCTACTATAAAAATTCTAATGCCATTATCTCTGCCGGTTGGATGCCTTTTGCTCGAGCAAGTAAATTGCAACCTGGGGATGTTTGTGTCTTTGAGCTCATTGATAGAGATGATCCGGTGTTTGATGTTCATATTTATAGAGCACAGGGTTAA 909 0.4026 MASSSYPPDKHSPPIVIRFFTIIHNESLQLENLKIPNKFTSKYGDGVPNPVYLKPPDGTQWKIEWTKHDDGEIFFENGWKEFAAYYSLNHGHLVRFDYNRTCFQIHIFNMSGLEIDYPSNDQTCDDDSVEILDEIPASFRGQSTMTLESSPSRMSATETETMNVEESNLEMPVIASTNKKLDVFDPGTSGFRALEEAQKFSSEYPSFIVKIRRANLWRSRANFEAALFRRYFKKKEYDVNIRFEGNLLPAKLRYYKNSNAIISAGWMPFARASKLQPGDVCVFELIDRDDPVFDVHIYRAQG 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91648g00003 302 Pfam B3 DNA binding domain 245 300 IPR003340 GO:0003677
Stsc91648g00003 302 Pfam B3 DNA binding domain 21 109 IPR003340 GO:0003677
Stsc91648g00003 302 SUPERFAMILY DNA-binding pseudobarrel domain 17 111 IPR015300 -
Stsc91648g00003 302 SUPERFAMILY DNA-binding pseudobarrel domain 200 301 IPR015300 -
Stsc91648g00003 302 ProSiteProfiles B3 DNA-binding domain profile. 251 301 IPR003340 GO:0003677
Stsc91648g00003 302 Gene3D - 16 112 IPR015300 -
Stsc91648g00003 302 CDD B3_DNA 18 109 IPR003340 GO:0003677
Stsc91648g00003 302 SMART B3_2 207 301 IPR003340 GO:0003677
Stsc91648g00003 302 SMART B3_2 19 111 IPR003340 GO:0003677
Stsc91648g00003 302 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Stsc91648g00003 302 CDD B3_DNA 229 299 IPR003340 GO:0003677
Stsc91648g00003 302 Gene3D - 188 301 IPR015300 -
Stsc91648g00003 302 PANTHER B3 DOMAIN-CONTAINING 18 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91648g00003 Stsc-Chr91648 11601 13316 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91648g00003 19 300 B3 DNA Binding Superfamily AT3G18990 24.850 3.70e-24 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc91648g00003 B3 6.2e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91648g00003 - - ahf:112717097 345.125